genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2021-04-30	autopep8: Fix E501	BonfaceKilz

2021-04-30	autopep8: Fix E301,E302,E303,E304,E305,E306	BonfaceKilz

2021-04-30	autopep8: Fix E20-E27	BonfaceKilz
	Run: python -m autopep8 --in-place --recrusive ./ --select\ E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,\ E242,E251,E252,E26,E265,E266,E27 -p 3
2021-04-29	Run `sed -i 's/(object)//g'`	BonfaceKilz
	See: https://is.gd/pL7IJF Ran: find . \( -type d -name .git -prune \) -o -type f -print0 \| xargs -0 sed -i 's/(object)//g'
2020-08-26	Remove "from __future__ import new_feature" statements	BonfaceKilz
	See: <https://docs.python.org/2/library/2to3.html#2to3fixer-future>
2020-08-19	Fix dictionary iteration methods	BonfaceKilz
	Run `2to3-3.8 -f dict -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-dict> and <https://stackoverflow.com/questions/17695456/why-does-python-3-need-dict-items-to-be-wrapped-with-list>
2020-04-16	Many changes, including:	zsloan
	- Added permutation strata option for R/qtl - Made a variety of aesthetic changes to collections-related pages - Made a variety of aesthetic changes to the multi-trait tool options on the search result and correlation pages - Made some functional changes to collections that prevent duplicate traits and ensure new traits are at the top - The "Default Collection" is now always at the bottom of the collection list and renamed to "Your Default Collection"
2020-04-03	Added option to select cofactors from collection for R/qtl	zsloan
	Fixed some issues with displaying the R/qtl results from the RData HET3-ITP dataa
2020-03-27	Added integration for using RData files with R/qtl, plus some other changes ↵	zsloan
	to how it decides which mapping methods to display on the trait page
2019-10-08	Fixed serious issue that caused output to be wrong for new reaper mapping	zsloan
	Haplotype analyst now works for GEMMA Increased margin a bit to fix minor issue with buttons getting cut off on certain Safari versions for bar chart
2019-09-24	Fixed issue that caused GEMMA to not work with genotype files without cM, ↵	zsloan
	though this issue still needs to be dealt with to get the new qtlreaper working
2019-06-05	Fixed issue that caused interval mapping to not work because the python ↵	zsloan
	implementation of the reaper Dataset object doesn't include the addinterval method (so for those situations I still use reaper) Fixed issue where the last chromosome wasn't displayed for mapping results (though still need to fix issue where points are drawn too far to the right when a specific range is viewed)
2019-05-24	Replaced qtlreaper Dataset object with python object	zsloan