| Age | Commit message (Expand) | Author |
|---|
| 2021-04-30 | autopep8: Run autopep8 100 times with target rules...Rules used are:
E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,E242,
E251,E252,E26,E265,E266,E27,E301,E302,E303,E304,E305,E306,
E401,E501,E70,E701,W291,W292,W293,W391,W504,E101,E11,E121,
E122,E123,E124,E125,E126,E127,E128,E129,E131,E133
| BonfaceKilz |
| 2021-04-30 | autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133 | BonfaceKilz |
| 2021-04-30 | autopep8: Fix E501 | BonfaceKilz |
| 2021-04-30 | autopep8: Fix E301,E302,E303,E304,E305,E306 | BonfaceKilz |
| 2021-04-30 | autopep8: Fix E20-E27...Run:
python -m autopep8 --in-place --recrusive ./ --select\
E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,\
E242,E251,E252,E26,E265,E266,E27 -p 3
| BonfaceKilz |
| 2020-08-19 | Remove extra whitespace(or add it) from comma separated items...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib>
| BonfaceKilz |
| 2018-07-02 | Added option to transform/normalize trait sample values (log2 and qnorm) on t......Got figures mostly working with transformed values, except for changing the y-axis range of one
Fixed issue with the home page "Make Default" button position (as well as the drop-downs in general)
Added timeout to Elasticsearch connection to fix related error
| zsloan |
| 2018-05-17 | Added script to quantile normalize a data set and enter its normalized sample......Added option to replace trait page sample/strain values with normalized ones
Began editing Lei's scatterplot code
Changed elasticsearch_tools' get_elasticsearch_connection so that it can also be used for purposes other than user authentication (by adding a "for_user" parameter)
| zsloan |
| 2018-04-16 | Remove statements that might be causing issues...* I can't swear on this, but it seems the presence of these statements
was causing elasticsearch to act weird.
| Muriithi Frederick Muriuki |
| 2018-04-16 | Merge remote-tracking branch 'pjotrp/testing' into testing | Muriithi Frederick Muriuki |
| 2018-04-16 | Update mappings for Elasticsearch 6.2. Update logger...* Update the indexes mappings to be compatible with the newer
Elasticsearch 6.2.* series.
Close the index before updating it, and reopen it after to help with
the re-indexing of the data.
* Update the error logger to include the exception that was thrown.
| Muriithi Frederick Muriuki |
| 2018-04-16 | Docs on elasticsearch use | Pjotr Prins |
| 2018-04-15 | Deactivate analysis of email_address field...* Prevent elasticsearch from analysing and tokenising the email_address
field so as to avoid issue with getting back all email addresses with
the same domain as the one being searched for.
| Muriithi Frederick Muriuki |
| 2018-04-05 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te... | Muriithi Frederick Muriuki |
| 2018-04-04 | ES: doc | Pjotr Prins |
| 2018-03-31 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te......* Fix conflicts
| Muriithi Frederick Muriuki |
| 2018-03-26 | Refactor startup config for gunicorn and werkzeug | Pjotr Prins |
| 2018-03-26 | Fixing authentication stuff so it uses parameters properly. Also no PYTHONPAT......it is now in the Guix build.
| Pjotr Prins |
| 2018-03-26 | Update module to make it more testable...* Update functions to make them more testable.
* Update code using updated functions.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Check elasticsearch at point of use...* Instead of checking for the state of elasticsearch at startup, check
the state at the moment the user requests a feature that depends on
elasticsearch.
This reduces the chances that the user is dropped onto an exception
page when elasticsearch server goes down.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add check for elasticsearch...* Add some extra checks to ensure that elasticsearch is running before
presenting the UI to the user.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Refactor common items to more generic methods....* Refactor code that can be used in more than one place to a more
generic method/function that's called by other methods
| Muriithi Frederick Muriuki |
| 2018-03-26 | Fail safely if elasticsearch is down or unconfigured...* If elasticsearch server is down, or the configuration variables are
not provided at startup or in a configuration file, then do not allow
the system to simply crash, but instead, inform the user that they
cannot use the services that depend on elasticsearch to be running.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Delay after save for indexing...* Elasticsearch need a short delay after adding document for it to index
the document for subsequent access.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add save_user() function...* On successful login via OAuth2, save the details of the user in
elasticsearch store, to avoid hitting the external provider for the
basic details.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add elasticsearch_tools module...* Collect variables and functions for using the elasticsearch system in
a separate module.
| Muriithi Frederick Muriuki |
| 2018-02-15 | Fixing authentication stuff so it uses parameters properly. Also no PYTHONPAT......it is now in the Guix build.
| Pjotr Prins |
| 2018-02-13 | Update module to make it more testable...* Update functions to make them more testable.
* Update code using updated functions.
| Muriithi Frederick Muriuki |
| 2018-02-09 | Check elasticsearch at point of use...* Instead of checking for the state of elasticsearch at startup, check
the state at the moment the user requests a feature that depends on
elasticsearch.
This reduces the chances that the user is dropped onto an exception
page when elasticsearch server goes down.
| Muriithi Frederick Muriuki |
| 2018-02-09 | Add check for elasticsearch...* Add some extra checks to ensure that elasticsearch is running before
presenting the UI to the user.
| Muriithi Frederick Muriuki |
| 2018-02-05 | Refactor common items to more generic methods....* Refactor code that can be used in more than one place to a more
generic method/function that's called by other methods
| Muriithi Frederick Muriuki |
| 2018-01-30 | Fail safely if elasticsearch is down or unconfigured...* If elasticsearch server is down, or the configuration variables are
not provided at startup or in a configuration file, then do not allow
the system to simply crash, but instead, inform the user that they
cannot use the services that depend on elasticsearch to be running.
| Muriithi Frederick Muriuki |
| 2018-01-19 | Delay after save for indexing...* Elasticsearch need a short delay after adding document for it to index
the document for subsequent access.
| Muriithi Frederick Muriuki |
| 2018-01-19 | Add save_user() function...* On successful login via OAuth2, save the details of the user in
elasticsearch store, to avoid hitting the external provider for the
basic details.
| Muriithi Frederick Muriuki |
| 2018-01-12 | Add elasticsearch_tools module...* Collect variables and functions for using the elasticsearch system in
a separate module.
| Muriithi Frederick Muriuki |
