| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-06-10 | Skip failing integration test | BonfaceKilz | |
| ATM, it's hard to by-pass the authentication decorators, and as such, skip this test for. This may be deleted later. | |||
| 2022-06-10 | Reverse polarity for gemma additive effects in tests | BonfaceKilz | |
| Fixes broken test. See: #89a7868. | |||
| 2022-04-14 | wqflask: Mock db connection when fetching case attributes | BonfaceKilz | |
| * wqflask/tests/integration/wqflask/test_metadata_edits.py (test_show_case_attributes): Mock "database_connection". Fixes this failing test: <https://ci.genenetwork.org/jobs/genenetwork2/223> | |||
| 2022-04-07 | Create a new page to display case-attributes and their descriptions | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py: Import "gn3.db.sample_data.get_case_attributes". (show_case_attribute_columns): New function/ end-point to show case-attributes. * wqflask/tests/integration/wqflask/test_metadata_edits.py: New integration tests for the above. * wqflask/tests/integration/wqflask/__init__.py: New file. * wqflask/wqflask/templates/case_attributes.html: New template file to display the above. | |||
| 2022-03-22 | Merge remote-tracking branch 'origin/testing' into feature/add_rqtl_pairscan | zsloan | |
| 2022-03-17 | Lint some test files | BonfaceKilz | |
| 2022-03-17 | Fix failing test | BonfaceKilz | |
| 2022-03-17 | Skip unittests | BonfaceKilz | |
| These tests touch on core data-structures in gn2; and there's a chance that refactoring said data-structures may break many things. | |||
| 2022-03-17 | Replace "g.db" object with a proper database connection | BonfaceKilz | |
| * wqflask/tests/unit/wqflask/api/test_correlation.py: Use proper database connection instead of the db connection attached at "g.db". * wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py: Ditto. * wqflask/wqflask/api/correlation.py: Ditto. * wqflask/wqflask/snp_browser/snp_browser.py: Ditto. | |||
| 2022-01-14 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵ | zsloan | |
| feature/add_rqtl_pairscan | |||
| 2021-11-04 | use gn3 imports | BonfaceKilz | |
| 2021-10-25 | Update failing tests when testing `get_user_access_roles` | BonfaceKilz | |
| 2021-10-25 | Replace "resource_id" with "resource_info" dict | BonfaceKilz | |
| This avoids calling Redis twice when fetching metadata about the resource. | |||
| 2021-10-25 | Get a users access mask | BonfaceKilz | |
| If a user has several access roles, select the highest role. | |||
| 2021-10-25 | Add test-cases for `get_user_membership` | BonfaceKilz | |
| 2021-10-25 | Move markdown_routes to api/markdown | BonfaceKilz | |
| All new API definitions should be migrated to "wqflask/ api" | |||
| 2021-10-13 | resolve merge conflict | Alexander Kabui | |
| 2021-10-12 | Fixed filename in test_gen_covariates_file; I think that the hash changed ↵ | zsloan | |
| because I changed the test dataset name from 'dataser_1' to 'dataset_1' | |||
| 2021-10-12 | Fix R/qtl mapping test | zsloan | |
| 2021-10-12 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵ | zsloan | |
| feature/add_rqtl_pairscan | |||
| 2021-10-12 | Fixed test_gen_covariates_file | zsloan | |
| 2021-10-12 | Fixed export_mapping_results test in test_run_mapping.py | zsloan | |
| 2021-10-09 | unittest for processing wgcna output | Alexander Kabui | |
| 2021-10-06 | tests: test_run_mapping: Add missing "name" attribute to tests | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing calls | BonfaceKilz | |
| After adding the missing attribute to "self.trait", we need to also need to update some missing calls. | |||
| 2021-10-06 | tests: test_run_mapping: Fix failing assert when getting perm strata | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing attribute to "self.trait" | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing positional argument "vals_hash" | BonfaceKilz | |
| 2021-07-12 | fix merge conflict | Alexander Kabui | |
| 2021-07-12 | tests: test_markdown_routes: Remove stubbed out tests | BonfaceKilz | |
| 2021-07-06 | replace rpy2 for tissue corr | Alexander Kabui | |
| 2021-05-27 | Merge pull request #579 from zsloan/feature/rqtl_with_gn3 | zsloan | |
| Use GN3 API for R/qtl | |||
| 2021-05-27 | Fix the way Mock is initialized | zsloan | |
| 2021-05-27 | Change test_rqtl_mapping.py to account for full results being returned from ↵ | zsloan | |
| the GN3 request | |||
| 2021-05-27 | Fixed way MockGroup was initialized | zsloan | |
| 2021-05-27 | Forgot to import dataclass | zsloan | |
| 2021-05-27 | Fixed syntax mistake when creating dataclass in test_rqtl_mapping.py | zsloan | |
| 2021-05-27 | Removed parts of test_rqtl_mapping.py referring to process_perm_results and ↵ | zsloan | |
| process_rqtl_results since that functionality was moved to GN3 | |||
| 2021-05-27 | Updated test_run_mapping.py to account for attribute keys being checked as ↵ | zsloan | |
| lowercase, though not sure if this will fully fix the test | |||
| 2021-05-27 | Improved test_rqtl_mapping.py with Bonface's recommendation of uses dataclasses | zsloan | |
| 2021-05-26 | tests: test_gen_menu: Remove get_species | BonfaceKilz | |
| 2021-05-22 | Fixed the mocked return_value for requests.post to fix broken test | zsloan | |
| 2021-05-22 | Fixed a couple broken tests | zsloan | |
| 2021-05-22 | Rewrote test_rqtl_mapping.py, though haven't done tests for all functions yet | zsloan | |
| 2021-05-10 | Merge branch 'testing' into feature/integrate-correlation-api | Alexander Kabui | |
| 2021-05-08 | tests: test_gen_menu: Remove app_context initialisation | BonfaceKilz | |
| This is no longer required since the global object "Flask.g.db" is no longer coupled to the gen_menu module. | |||
| 2021-05-08 | tests: test_gen_menu: Update failing tests | BonfaceKilz | |
| Update tests to use (and mock) the injected MySQL connection object. | |||
| 2021-05-05 | tests: test_species: Update failing tests | BonfaceKilz | |
| 2021-05-05 | templates: test_species: Add tests for instantiating Chromosomes | BonfaceKilz | |
| 2021-05-05 | tests: test_species: Test that IndChromosome instantiates correctly | BonfaceKilz | |
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