genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2022-09-08	Delete dead imports	Munyoki Kilyungi
	* wqflask/base/data_set.py: Remove un-used imports. * wqflask/base/trait.py: Ditto. wqflask/tests/wqflask/show_trait/test_show_trait.py: Ditto. * wqflask/wqflask/show_trait/show_trait.py: Ditto. * wqflask/wqflask/views: Ditto.
2022-09-05	Update values for "additive" in failing gemma test	Munyoki Kilyungi
	* wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py (TestGemmaMapping.test_parse_loco_outputfile_found): Use a halved value in expected_results["additive"].
2022-08-31	Add transform parameter to mapping api unit test	zsloan

2022-08-31	Fix failing api/test_mapping.py test	zsloan

2022-08-08	remove unnessary append to list	Alexander_Kabui

2022-08-08	remove test;test is redundant	Alexander_Kabui

2022-08-08	tests refactoring	Alexander_Kabui

2022-06-10	Skip failing integration test	BonfaceKilz
	ATM, it's hard to by-pass the authentication decorators, and as such, skip this test for. This may be deleted later.
2022-06-10	Reverse polarity for gemma additive effects in tests	BonfaceKilz
	Fixes broken test. See: #89a7868.
2022-04-14	wqflask: Mock db connection when fetching case attributes	BonfaceKilz
	* wqflask/tests/integration/wqflask/test_metadata_edits.py (test_show_case_attributes): Mock "database_connection". Fixes this failing test: <https://ci.genenetwork.org/jobs/genenetwork2/223>
2022-04-07	Create a new page to display case-attributes and their descriptions	BonfaceKilz
	* wqflask/wqflask/metadata_edits.py: Import "gn3.db.sample_data.get_case_attributes". (show_case_attribute_columns): New function/ end-point to show case-attributes. * wqflask/tests/integration/wqflask/test_metadata_edits.py: New integration tests for the above. * wqflask/tests/integration/wqflask/__init__.py: New file. * wqflask/wqflask/templates/case_attributes.html: New template file to display the above.
2022-03-22	Merge remote-tracking branch 'origin/testing' into feature/add_rqtl_pairscan	zsloan

2022-03-17	Lint some test files	BonfaceKilz

2022-03-17	Fix failing test	BonfaceKilz

2022-03-17	Skip unittests	BonfaceKilz
	These tests touch on core data-structures in gn2; and there's a chance that refactoring said data-structures may break many things.
2022-03-17	Replace "g.db" object with a proper database connection	BonfaceKilz
	* wqflask/tests/unit/wqflask/api/test_correlation.py: Use proper database connection instead of the db connection attached at "g.db". * wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py: Ditto. * wqflask/wqflask/api/correlation.py: Ditto. * wqflask/wqflask/snp_browser/snp_browser.py: Ditto.
2022-01-14	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵	zsloan
	feature/add_rqtl_pairscan
2021-11-04	use gn3 imports	BonfaceKilz

2021-10-25	Update failing tests when testing `get_user_access_roles`	BonfaceKilz

2021-10-25	Replace "resource_id" with "resource_info" dict	BonfaceKilz
	This avoids calling Redis twice when fetching metadata about the resource.
2021-10-25	Get a users access mask	BonfaceKilz
	If a user has several access roles, select the highest role.
2021-10-25	Add test-cases for `get_user_membership`	BonfaceKilz

2021-10-25	Move markdown_routes to api/markdown	BonfaceKilz
	All new API definitions should be migrated to "wqflask/ api"
2021-10-13	resolve merge conflict	Alexander Kabui

2021-10-12	Fixed filename in test_gen_covariates_file; I think that the hash changed ↵	zsloan
	because I changed the test dataset name from 'dataser_1' to 'dataset_1'
2021-10-12	Fix R/qtl mapping test	zsloan

2021-10-12	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵	zsloan
	feature/add_rqtl_pairscan
2021-10-12	Fixed test_gen_covariates_file	zsloan

2021-10-12	Fixed export_mapping_results test in test_run_mapping.py	zsloan

2021-10-09	unittest for processing wgcna output	Alexander Kabui

2021-10-06	tests: test_run_mapping: Add missing "name" attribute to tests	BonfaceKilz

2021-10-06	tests: test_run_mapping: Add missing calls	BonfaceKilz
	After adding the missing attribute to "self.trait", we need to also need to update some missing calls.
2021-10-06	tests: test_run_mapping: Fix failing assert when getting perm strata	BonfaceKilz

2021-10-06	tests: test_run_mapping: Add missing attribute to "self.trait"	BonfaceKilz

2021-10-06	tests: test_run_mapping: Add missing positional argument "vals_hash"	BonfaceKilz

2021-07-12	fix merge conflict	Alexander Kabui

2021-07-12	tests: test_markdown_routes: Remove stubbed out tests	BonfaceKilz

2021-07-06	replace rpy2 for tissue corr	Alexander Kabui

2021-05-27	Merge pull request #579 from zsloan/feature/rqtl_with_gn3	zsloan
	Use GN3 API for R/qtl
2021-05-27	Fix the way Mock is initialized	zsloan

2021-05-27	Change test_rqtl_mapping.py to account for full results being returned from ↵	zsloan
	the GN3 request
2021-05-27	Fixed way MockGroup was initialized	zsloan

2021-05-27	Forgot to import dataclass	zsloan

2021-05-27	Fixed syntax mistake when creating dataclass in test_rqtl_mapping.py	zsloan

2021-05-27	Removed parts of test_rqtl_mapping.py referring to process_perm_results and ↵	zsloan
	process_rqtl_results since that functionality was moved to GN3
2021-05-27	Updated test_run_mapping.py to account for attribute keys being checked as ↵	zsloan
	lowercase, though not sure if this will fully fix the test
2021-05-27	Improved test_rqtl_mapping.py with Bonface's recommendation of uses dataclasses	zsloan

2021-05-26	tests: test_gen_menu: Remove get_species	BonfaceKilz

2021-05-22	Fixed the mocked return_value for requests.post to fix broken test	zsloan

2021-05-22	Fixed a couple broken tests	zsloan