genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2019-02-18	Updated installation instructions and SERVER_PORT for single flask server	Pjotr Prins

2018-03-26	Refactor startup config for gunicorn and werkzeug	Pjotr Prins

2018-01-29	Gunicorn works	Pjotr Prins

2018-01-29	startup script: adapting for gunicorn	Pjotr Prins

2017-12-20	Bring in some earlier work - mostly documentation and startup handling	Pjotr Prins

2017-04-25	Fixed issue with correlation result trait links if target dataset is ↵	zsloan
	different from base dataset Improved collection list and view table appearances Added question mark image for glossary entries in table headers Fixed issue where extra decimal place sometimes appeared in bar chart Y axis tick values
2017-04-05	- Temporary traits can be created, viewed, and added to collections	zsloan
	- Correct PCA trait data is created but can't be saved yet - Added inner margins by increasing xDomain and yDomain of probability plot on trait page - Increased X/Y-axis label font size - Turned "processes" to 0 on runserver.py for PROD setting, since it doesn't work with threading - Improved appearance of correlation page table - Added links to github to index page - Removed js_data from GEMMA/PLINK mapping results, since it isn't used for those - Removed "Tissue" from trait page for phenotype traits
2016-10-03	Debug: sanitize some output	Pjotr Prins

2016-10-03	Config: use server port setting	Pjotr Prins

2016-06-19	gn_server: SQL handling	Pjotr Prins

2016-06-18	Logging settings	Pjotr Prins

2016-06-18	Runner: updated info	Pjotr Prins

2016-06-18	Logger: more info	Pjotr Prins

2016-06-18	Logger: replacing print statements	Pjotr Prins

2016-06-18	Logger: introducing logging	Pjotr Prins

2016-06-18	Logging: behaviours	Pjotr Prins

2016-06-18	Logger: improving output	Pjotr Prins

2016-06-18	Changed file permssions to non-executable	Pjotr Prins

2016-04-20	Remover dependency to logger_tree (may reintroduce later)	pjotrp

2015-05-18	fix attribute coloring	Artem Tarasov
	also I found out that there are two legends shown simultaneously, but one is suitable only for discrete values, and the other for continuous; now only the suitable one is shown
2015-05-01	Added Pjotr's latest pylmm changes	zsloan
	Added GEMMA and necessary plink-format genotype files in gemma directory Added the GEMMA genotype files to git LFS Removed some unnecessary/duplicated code from interval_mapping.py Separated GEMMA mapping code into its own file (will also do this for other methods) and fixed and issue that caused it to not run Added the table to the pair scan results page and wrote some code adding its attributes to each marker object, but it still isn't working yet
2015-03-23	Updates to make GN2 work on my version of penguin (ports, and paths)	DannyArends

2014-09-22	Adding the port as a parameter to runserver; this should just be temporary until	Zachary Sloan
	I figure out how to get it to read the port from the config file instead Using runserver.py instead of secure_server.py because of an error with the latter that I haven't figured out how to fix yet Improved the appearance of several of the tables
2014-05-05	Committing a bunch of changes related to integrating GEMMA and	Zachary Sloan
	adding the correlation matrix page
2013-03-07	Have first 45% of progress bar working	Zachary Sloan
	Changed "threaded" to True in runserver.py; this fixed issue related to getting progress bar to work
2012-10-25	Looks like the code that imports logging was changed in runserver.py	Zachary Sloan
	Small change to the code printing out fd in search_results.py
2012-06-05	Actually getting some results out of the trait and data analysis page	Sam Ockman

2012-06-01	Views and templates modified to allow template analysis	Sam Ockman

2012-05-24	Trying to get stuff working under new structure	Sam Ockman