| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2013-10-11 | Merge /home/lei/gene | Zachary Sloan | |
| Conflicts: wqflask/maintenance/quick_search_table.py | |||
| 2013-10-08 | Did some work with interval mapping page; will use qtl reaper to do | Zachary Sloan | |
| the mapping, since it is reliable/fast and avoids us having to rewrite from scratch using something like r/qtl | |||
| 2013-09-24 | Did some work towards doing the tissue correlation for all traits | root | |
| in a dataset (in order to sort by tissue correlation instead of sample correlation). | |||
| 2013-08-14 | Removed some duplicate files in the maintenance folder | Zachary Sloan | |
| 2013-08-13 | Added several test files and the file with the class that | Zachary Sloan | |
| they import (browser_test.py) | |||
| 2013-08-07 | Fixed things with the dataset dropdowns and mRNA datasets | Zachary Sloan | |
| Improved the templates for a couple pages related to changing user password, etc | |||
| 2013-08-02 | Fixed a bug related to groups with genofiles (not sure if it makes sense | Zachary Sloan | |
| for them not to have genofiles yet) | |||
| 2013-07-23 | Fixed a couple issues with he quick_search_table.py script | Zachary Sloan | |
| Added notes on using percona to optimise mysql to gn_installation_notes.txt Started moving "get_trait_data" to DataSet since it is the same regardless of the particular DataSet subclass (PhenotypeDataSet, MrnaAssayDataSet, etc) | |||
| 2013-07-19 | Finished integrating code that reads sample list from geno files | Zachary Sloan | |
| withouot using reaper and caches results so it doesn't need to read the file every single time someone loads a page | |||
| 2013-07-19 | Created file gen_group_samplelists that iterates through all genofiles | Zachary Sloan | |
| and builds each groups' samplelist | |||
| 2013-07-18 | Added Amelie's rat data genotypes | Zachary Sloan | |
| Got human mapping mostly working Fixed dataset dropdown menus | |||
| 2013-07-18 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan | |
| Conflicts: wqflask/base/webqtlConfigLocal.py wqflask/maintenance/gen_select_dataset.py wqflask/wqflask/static/new/javascript/dataset_menu_structure.json | |||
| 2013-07-18 | Added to installation notes | Zachary Sloan | |
| Removed webqtlConfigLocal file containing passwords Updated main page dropdown menus (dataset_menu_structure.json) | |||
| 2013-07-17 | Fixed gen_select_dataset.py | Zachary Sloan | |
| Appended redis installation info to notes | |||
| 2013-05-02 | Got quick search code running (but not displaying properly) | Zachary Sloan | |
| Code that processes subset of snps works, in process of putting into a class | |||
| 2013-04-26 | Added file that checks how much time is added to a loop's runtime by print ↵ | Zachary Sloan | |
| statements Continued work on file that processes each individual chunk of the snp iterator/plink input | |||
| 2013-04-24 | Began writing code that writes some objects used in LMM to redis | Zachary Sloan | |
| and writes/reads eachitem in the plink_input | |||
| 2013-04-24 | Checking in quick_search_table.py before using pylin | Zachary Sloan | |
| 2013-04-24 | Fixed issue with the part of quick_search_table.py that loads phenotype traits | Zachary Sloan | |
| 2013-04-23 | Created file correlation_plot.py for the correlation scatterplot | Zachary Sloan | |
| Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py | |||
| 2013-04-11 | Fixed a bug with quick_search_table.py | Zachary Sloan | |
| Edited generate_probesetfreeze_file.py to try running it on the dataset with incorrect regression lines | |||
| 2013-04-10 | Created template for quick search page | Zachary Sloan | |
| Fixed a couple bugs with quick_search_table.py | |||
| 2013-04-09 | Have quick search working for phenotypes | Zachary Sloan | |
| 2013-03-28 | quick_search_table.py seems to be running OK for the PublishXRef | Zachary Sloan | |
| table, but will need to check later to make sure | |||
| 2013-03-28 | quick_search_table.py now seems to run correctly for ProbeSetXRef | Zachary Sloan | |
| rows | |||
| 2013-03-28 | Committing before putting quick_search_table code in classes | Zachary Sloan | |
| 2013-03-27 | Got quick_search_table.py to a point where it runs; will | Zachary Sloan | |
| know tomorrow whether it ran correctly or not | |||
| 2013-03-26 | Continued working on quick_search_table.py, which now gets | Zachary Sloan | |
| all of the terms from the ProbeSet table to be included in the quick search | |||
| 2013-03-26 | Created quick_search_table.py to create table with all of the | Zachary Sloan | |
| information needed for the the quick search features (which searches across all datasets) | |||
| 2013-03-02 | Created generate_probesetfreeze_file to create the | Zachary Sloan | |
| "probesetfreeze data matrix" file corresponding with the muscle dataset Evan was having trouble with | |||
| 2012-10-25 | Got the Make Default option working on the home page | Zachary Sloan | |
| 2012-10-24 | Now builds json datastructure for menus correctly | Zachary Sloan | |
| 2012-10-19 | Finished gen_select_dataset.py which generates the json file that defines the | Zachary Sloan | |
| data structure used for the index page select dropdowns | |||
| 2012-10-19 | Reindented genSelectDatasetJS as gen_select_dataset | Zachary Sloan | |
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |