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2016-01-29Info button should now work for phenotype and genotype datasetszsloan
2016-01-27Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-01-27Added info button to Dataset dropdown on index pagezsloan
Fixed script that generates dataset dropdown json file to include accession id Fixed dataset link on search results page
2016-01-26Removed a bunch of files/directories/packages that are no longer used and ↵zsloan
some corresponding imports
2015-07-09Forgot to add one change to the last commitzsloan
2015-07-09Mapping methods now check for existing genotype files.zsloan
Currently we still usually get our samplelists from the genofile. This is dumb because it results in us having a bunch of "dummy" genofiles for certain data sets (seems to be mostly human ones). This means that checking for the genofile alone isn't enough to determine if a mapping method should exist for a given group I wrote some code that will instead get the samplelist from the plink .fam file for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy .geno files, but we can't yet do so because it's currently the only place we seem to be storing the sample list for some groups. I also moved gemma into the plink directory to get it out of the git tree. Since it uses the same files as plink, it doesn't make sense for it to be in its own separate directory
2015-05-11Fixed gen_select_dataset so that it does not include Phenotype andzsloan
Genotype groups when the corresponding data sets do not exist Interval Mapping no longer shows up for human traits Fixed the appearance of the mirror links on the main page
2014-08-28Added a validation that warns the user of the number of permutations forZachary Sloan
pyLMM is more than 20 (due to speed) Changed the port in the flask settings to 5002 due to adding the new production server branch
2014-07-14Merge /home/zas1024/geneLei Yan
Conflicts: wqflask/wqflask/static/new/javascript/dataset_select_menu.js wqflask/wqflask/templates/corr_scatter_plot_old.html
2014-06-25Added Karl's correlation matrix codeZachary Sloan
Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait
2014-05-05Committing a bunch of changes related to integrating GEMMA andZachary Sloan
adding the correlation matrix page
2014-03-05Improved load_genotypes.pyLei Yan
Committer: Lei Yan <lei@penguin.uthsc.edu> On branch master
2014-02-28Made some changes to Lei's IO code for GN1 and GN2 genofilesLei Yan
2014-02-23On branch masterLei Yan
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2014-02-20Committer: root <root@alexandria.uthsc.edu>root
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2014-02-20Committer: root <root@alexandria.uthsc.edu>root
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2014-02-20On branch masterLei Yan
2014-02-20Committer: root <root@alexandria.uthsc.edu>root
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2014-02-19Committer: root <root@alexandria.uthsc.edu>root
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2014-02-19On branch masterLei Yan
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