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2015-07-09Forgot to add one change to the last commitzsloan
2015-07-09Mapping methods now check for existing genotype files....Currently we still usually get our samplelists from the genofile. This is dumb because it results in us having a bunch of "dummy" genofiles for certain data sets (seems to be mostly human ones). This means that checking for the genofile alone isn't enough to determine if a mapping method should exist for a given group I wrote some code that will instead get the samplelist from the plink .fam file for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy .geno files, but we can't yet do so because it's currently the only place we seem to be storing the sample list for some groups. I also moved gemma into the plink directory to get it out of the git tree. Since it uses the same files as plink, it doesn't make sense for it to be in its own separate directory zsloan
2015-05-11Fixed gen_select_dataset so that it does not include Phenotype and...Genotype groups when the corresponding data sets do not exist Interval Mapping no longer shows up for human traits Fixed the appearance of the mirror links on the main page zsloan
2014-08-28Added a validation that warns the user of the number of permutations for...pyLMM is more than 20 (due to speed) Changed the port in the flask settings to 5002 due to adding the new production server branch Zachary Sloan
2014-07-14Merge /home/zas1024/gene...Conflicts: wqflask/wqflask/static/new/javascript/dataset_select_menu.js wqflask/wqflask/templates/corr_scatter_plot_old.html Lei Yan
2014-06-25Added Karl's correlation matrix code...Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait Zachary Sloan
2014-05-05Committing a bunch of changes related to integrating GEMMA and...adding the correlation matrix page Zachary Sloan
2014-03-05Improved load_genotypes.py...Committer: Lei Yan <lei@penguin.uthsc.edu> On branch master Lei Yan
2014-02-28Made some changes to Lei's IO code for GN1 and GN2 genofilesLei Yan
2014-02-23On branch masterLei Yan
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2014-02-20Committer: root <root@alexandria.uthsc.edu>...On branch master root
2014-02-20Committer: root <root@alexandria.uthsc.edu>...On branch master root
2014-02-20Committer: root <root@alexandria.uthsc.edu>...On branch master root
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2014-02-20Committer: root <root@alexandria.uthsc.edu>...On branch master root
2014-02-20On branch masterLei Yan
2014-02-20Committer: root <root@alexandria.uthsc.edu>...On branch master root
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2014-02-19Committer: root <root@alexandria.uthsc.edu>...On branch master root
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2014-02-19Committer: root <root@alexandria.uthsc.edu>...On branch master root
2014-02-19On branch masterLei Yan
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2014-02-19Committer: root <root@alexandria.uthsc.edu>...On branch master root
2014-02-14On branch masterLei Yan