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2015-07-09Forgot to add one change to the last commitzsloan
2015-07-09Mapping methods now check for existing genotype files.zsloan
Currently we still usually get our samplelists from the genofile. This is dumb because it results in us having a bunch of "dummy" genofiles for certain data sets (seems to be mostly human ones). This means that checking for the genofile alone isn't enough to determine if a mapping method should exist for a given group I wrote some code that will instead get the samplelist from the plink .fam file for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy .geno files, but we can't yet do so because it's currently the only place we seem to be storing the sample list for some groups. I also moved gemma into the plink directory to get it out of the git tree. Since it uses the same files as plink, it doesn't make sense for it to be in its own separate directory
2015-05-11Fixed gen_select_dataset so that it does not include Phenotype andzsloan
Genotype groups when the corresponding data sets do not exist Interval Mapping no longer shows up for human traits Fixed the appearance of the mirror links on the main page
2014-08-28Added a validation that warns the user of the number of permutations forZachary Sloan
pyLMM is more than 20 (due to speed) Changed the port in the flask settings to 5002 due to adding the new production server branch
2014-07-14Merge /home/zas1024/geneLei Yan
Conflicts: wqflask/wqflask/static/new/javascript/dataset_select_menu.js wqflask/wqflask/templates/corr_scatter_plot_old.html
2014-06-25Added Karl's correlation matrix codeZachary Sloan
Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait
2014-05-05Committing a bunch of changes related to integrating GEMMA andZachary Sloan
adding the correlation matrix page
2014-03-05Improved load_genotypes.pyLei Yan
Committer: Lei Yan <lei@penguin.uthsc.edu> On branch master
2014-02-28Made some changes to Lei's IO code for GN1 and GN2 genofilesLei Yan
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2014-02-20Committer: root <root@alexandria.uthsc.edu>root
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2014-02-19Committer: root <root@alexandria.uthsc.edu>root
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2014-02-14On branch masterLei Yan
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