genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2020-03-10	Added back macaque monkey to dropdown generation, not sure why it was removed...	zsloan
2019-12-09	Fixed minor issue that caused the sample list to be fetched incorrectly for a...	zsloan
2019-10-18	Added UniProt link and fixed issue that caused sample lists to not be formed ...	zsloan
2019-05-14	Added all of the third party links from GN1	zsloan
2019-04-04	Fixed issue where dataset_menu_structure.json included some groups with no vi...	zsloan
2019-04-03	Fixed an issue that caused global phenotype search to often not work and cert...	zsloan
2019-03-27	Changed gen_select_dataset.py to be able to show multiple datasets under the ...	zsloan
2018-12-21	Fixed collections so they can be very large (1000+ traits)	zsloan
2018-12-05	Fixed issue where SNP track for mapping did not appear correctly	zsloan
2018-11-20	Added option to select chromosome from trait page when mapping	zsloan
2018-10-11	- Added fix for GEMMA LOCO	zsloan
2018-10-01	- Can now remove cofactors from correlation scatterplot and select them by ju...	zsloan
2018-05-25	Fixed issue causing anonymous collections to not work on my branch and stagin...	zsloan
2018-05-17	Added script to quantile normalize a data set and enter its normalized sample...	zsloan
2018-04-23	Changed GEMMA mapping to use -lmm 2 (Likelihood ratio test) as a parameter in...	zsloan
2018-04-16	Resolved conflicts after pulling changes	zsloan
2018-04-12	README and docs	Pjotr Prins
2018-04-09	Removed unused code from get_select_dataset.py and get_group_samplelists.py s...	zsloan
2018-04-09	Removed unused code from convert_geno_to_bimbam.py and corestats.py	zsloan
2017-12-06	Fixed drop-down group order	zsloan
2017-12-04	Fixed drop-down scripts to more appropriately deal with BXD300 groups (though...	zsloan
2017-11-06	Replaced Histogram and Bar Chart with Plotly version and added new Box Plot w...	zsloan
2017-09-07	Added the script to convert bimbam to kinship matrices	zsloan
2017-09-05	Added file converting genofiles to bimbam	zsloan
2017-05-21	Merge from the diet branch.	Pjotr Prins
2017-02-08	Changed the way .fam files are written/read, which fixes the issue with GEMMA...	zsloan
2016-12-12	Moved a bunch of functions out of the GeneralTrait class that didn't need to ...	zsloan
2016-09-30	Add missing __init__.py	Pjotr Prins
2016-09-13	Fixed the path for the json file in gen_select_dataset.py since it was wrong ...	zsloan
2016-09-13	Run scripts from ./wqflask - just like the webserver	Pjotr Prins
2016-09-10	Comment	Pjotr Prins
2016-09-10	Support for running maintenance scripts so they can pick up all webserver set...	Pjotr Prins
2016-07-16	README: added info	Pjotr Prins
2016-06-19	Renamed settings so they are grouped together	Pjotr Prins
2016-06-18	Changed file permssions to non-executable	Pjotr Prins
2016-06-18	Disable setting sys.paths	Pjotr Prins
2016-06-17	Conflict	Pjotr Prins
2016-06-17	Removed trailing spaces in .py and .js files	Pjotr Prins
2016-06-16	Generating the menu is now obsolete	Pjotr Prins
2016-04-20	More hard-coded	pjotrp
2016-04-20	[PATCH 037/100] WebQtlConfig: sanitizing naming and used vars	Pjotr Prins
2016-02-18	Edited gen_select_dataset to remove confidential datasets	zsloan
2016-01-29	Info button should now work for phenotype and genotype datasets	zsloan
2016-01-27	Merge branch 'master' of github.com:genenetwork/genenetwork2 into development	zsloan
2016-01-27	Added info button to Dataset dropdown on index page	zsloan
2016-01-26	Removed a bunch of files/directories/packages that are no longer used and som...	zsloan
2015-07-09	Forgot to add one change to the last commit	zsloan
2015-07-09	Mapping methods now check for existing genotype files.	zsloan
2015-05-11	Fixed gen_select_dataset so that it does not include Phenotype and	zsloan
2014-08-28	Added a validation that warns the user of the number of permutations for	Zachary Sloan