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path: root/wqflask/maintenance/quick_search_table.py
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2014-05-05Committing a bunch of changes related to integrating GEMMA andZachary Sloan
adding the correlation matrix page
2013-10-11Merge /home/lei/geneZachary Sloan
Conflicts: wqflask/maintenance/quick_search_table.py
2013-10-08Did some work with interval mapping page; will use qtl reaper to doZachary Sloan
the mapping, since it is reliable/fast and avoids us having to rewrite from scratch using something like r/qtl
2013-09-24Did some work towards doing the tissue correlation for all traitsroot
in a dataset (in order to sort by tissue correlation instead of sample correlation).
2013-07-23Fixed a couple issues with he quick_search_table.py scriptZachary Sloan
Added notes on using percona to optimise mysql to gn_installation_notes.txt Started moving "get_trait_data" to DataSet since it is the same regardless of the particular DataSet subclass (PhenotypeDataSet, MrnaAssayDataSet, etc)
2013-05-02Got quick search code running (but not displaying properly)Zachary Sloan
Code that processes subset of snps works, in process of putting into a class
2013-04-24Began writing code that writes some objects used in LMM to redisZachary Sloan
and writes/reads eachitem in the plink_input
2013-04-24Checking in quick_search_table.py before using pylinZachary Sloan
2013-04-24Fixed issue with the part of quick_search_table.py that loads phenotype traitsZachary Sloan
2013-04-23Created file correlation_plot.py for the correlation scatterplotZachary Sloan
Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py
2013-04-11Fixed a bug with quick_search_table.pyZachary Sloan
Edited generate_probesetfreeze_file.py to try running it on the dataset with incorrect regression lines
2013-04-10Created template for quick search pageZachary Sloan
Fixed a couple bugs with quick_search_table.py
2013-04-09Have quick search working for phenotypesZachary Sloan
2013-03-28quick_search_table.py seems to be running OK for the PublishXRefZachary Sloan
table, but will need to check later to make sure
2013-03-28quick_search_table.py now seems to run correctly for ProbeSetXRefZachary Sloan
rows
2013-03-28Committing before putting quick_search_table code in classesZachary Sloan
2013-03-27Got quick_search_table.py to a point where it runs; willZachary Sloan
know tomorrow whether it ran correctly or not
2013-03-26Continued working on quick_search_table.py, which now getsZachary Sloan
all of the terms from the ProbeSet table to be included in the quick search
2013-03-26Created quick_search_table.py to create table with all of theZachary Sloan
information needed for the the quick search features (which searches across all datasets)