genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2014-05-05	Committing a bunch of changes related to integrating GEMMA and	Zachary Sloan
	adding the correlation matrix page
2013-10-11	Merge /home/lei/gene	Zachary Sloan
	Conflicts: wqflask/maintenance/quick_search_table.py
2013-10-08	Did some work with interval mapping page; will use qtl reaper to do	Zachary Sloan
	the mapping, since it is reliable/fast and avoids us having to rewrite from scratch using something like r/qtl
2013-09-24	Did some work towards doing the tissue correlation for all traits	root
	in a dataset (in order to sort by tissue correlation instead of sample correlation).
2013-07-23	Fixed a couple issues with he quick_search_table.py script	Zachary Sloan
	Added notes on using percona to optimise mysql to gn_installation_notes.txt Started moving "get_trait_data" to DataSet since it is the same regardless of the particular DataSet subclass (PhenotypeDataSet, MrnaAssayDataSet, etc)
2013-05-02	Got quick search code running (but not displaying properly)	Zachary Sloan
	Code that processes subset of snps works, in process of putting into a class
2013-04-24	Began writing code that writes some objects used in LMM to redis	Zachary Sloan
	and writes/reads eachitem in the plink_input
2013-04-24	Checking in quick_search_table.py before using pylin	Zachary Sloan

2013-04-24	Fixed issue with the part of quick_search_table.py that loads phenotype traits	Zachary Sloan

2013-04-23	Created file correlation_plot.py for the correlation scatterplot	Zachary Sloan
	Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py
2013-04-11	Fixed a bug with quick_search_table.py	Zachary Sloan
	Edited generate_probesetfreeze_file.py to try running it on the dataset with incorrect regression lines
2013-04-10	Created template for quick search page	Zachary Sloan
	Fixed a couple bugs with quick_search_table.py
2013-04-09	Have quick search working for phenotypes	Zachary Sloan

2013-03-28	quick_search_table.py seems to be running OK for the PublishXRef	Zachary Sloan
	table, but will need to check later to make sure
2013-03-28	quick_search_table.py now seems to run correctly for ProbeSetXRef	Zachary Sloan
	rows
2013-03-28	Committing before putting quick_search_table code in classes	Zachary Sloan

2013-03-27	Got quick_search_table.py to a point where it runs; will	Zachary Sloan
	know tomorrow whether it ran correctly or not
2013-03-26	Continued working on quick_search_table.py, which now gets	Zachary Sloan
	all of the terms from the ProbeSet table to be included in the quick search
2013-03-26	Created quick_search_table.py to create table with all of the	Zachary Sloan
	information needed for the the quick search features (which searches across all datasets)