genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2017-02-08	Changed the way .fam files are written/read, which fixes the issue with GEMMA...	zsloan
2016-06-18	Changed file permssions to non-executable	Pjotr Prins
2016-06-17	Removed trailing spaces in .py and .js files	Pjotr Prins
2016-04-20	[PATCH 037/100] WebQtlConfig: sanitizing naming and used vars	Pjotr Prins
2015-07-09	Forgot to add one change to the last commit	zsloan
2015-07-09	Mapping methods now check for existing genotype files....Currently we still usually get our samplelists from the genofile. This is dumb because it results in us having a bunch of "dummy" genofiles for certain data sets (seems to be mostly human ones). This means that checking for the genofile alone isn't enough to determine if a mapping method should exist for a given group I wrote some code that will instead get the samplelist from the plink .fam file for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy .geno files, but we can't yet do so because it's currently the only place we seem to be storing the sample list for some groups. I also moved gemma into the plink directory to get it out of the git tree. Since it uses the same files as plink, it doesn't make sense for it to be in its own separate directory	zsloan
2014-05-05	Committing a bunch of changes related to integrating GEMMA and...adding the correlation matrix page	Zachary Sloan
2013-08-02	Fixed a bug related to groups with genofiles (not sure if it makes sense...for them not to have genofiles yet)	Zachary Sloan
2013-07-19	Finished integrating code that reads sample list from geno files...withouot using reaper and caches results so it doesn't need to read the file every single time someone loads a page	Zachary Sloan
2013-07-19	Created file gen_group_samplelists that iterates through all genofiles...and builds each groups' samplelist	Zachary Sloan