genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2021-04-30	autopep8: Fix E301,E302,E303,E304,E305,E306	BonfaceKilz

2020-08-26	Remove "from __future__ import new_feature" statements	BonfaceKilz
	See: <https://docs.python.org/2/library/2to3.html#2to3fixer-future>
2019-12-09	Fixed minor issue that caused the sample list to be fetched incorrectly for ↵	zsloan
	a group groups
2018-04-09	Removed unused code from get_select_dataset.py and get_group_samplelists.py ↵	zsloan
	scripts
2017-02-08	Changed the way .fam files are written/read, which fixes the issue with ↵	zsloan
	GEMMA mapping accuracy.
2016-06-18	Changed file permssions to non-executable	Pjotr Prins

2016-06-17	Removed trailing spaces in .py and .js files	Pjotr Prins

2016-04-20	[PATCH 037/100] WebQtlConfig: sanitizing naming and used vars	Pjotr Prins

2015-07-09	Forgot to add one change to the last commit	zsloan

2015-07-09	Mapping methods now check for existing genotype files.	zsloan
	Currently we still usually get our samplelists from the genofile. This is dumb because it results in us having a bunch of "dummy" genofiles for certain data sets (seems to be mostly human ones). This means that checking for the genofile alone isn't enough to determine if a mapping method should exist for a given group I wrote some code that will instead get the samplelist from the plink .fam file for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy .geno files, but we can't yet do so because it's currently the only place we seem to be storing the sample list for some groups. I also moved gemma into the plink directory to get it out of the git tree. Since it uses the same files as plink, it doesn't make sense for it to be in its own separate directory
2014-05-05	Committing a bunch of changes related to integrating GEMMA and	Zachary Sloan
	adding the correlation matrix page
2013-08-02	Fixed a bug related to groups with genofiles (not sure if it makes sense	Zachary Sloan
	for them not to have genofiles yet)
2013-07-19	Finished integrating code that reads sample list from geno files	Zachary Sloan
	withouot using reaper and caches results so it doesn't need to read the file every single time someone loads a page
2013-07-19	Created file gen_group_samplelists that iterates through all genofiles	Zachary Sloan
	and builds each groups' samplelist