| Age | Commit message (Expand) | Author |
|---|---|---|
| 2018-05-25 | Fixed issue causing anonymous collections to not work on my branch and stagin......Added script to convert the dryad format genotype files to BIMBAM removed db_uri from parameters of parse_db_uri in gen_select_dataset.py, since it can now just pull it from settings as a global variable | zsloan |
| 2018-04-16 | Resolved conflicts after pulling changes | zsloan |
| 2018-04-12 | README and docs | Pjotr Prins |
| 2018-04-09 | Removed unused code from get_select_dataset.py and get_group_samplelists.py s... | zsloan |
| 2017-12-06 | Fixed drop-down group order | zsloan |
| 2017-12-04 | Fixed drop-down scripts to more appropriately deal with BXD300 groups (though......Added some header data to mapping output file Fixed links in Network Group nodes/edges | zsloan |
| 2017-11-06 | Replaced Histogram and Bar Chart with Plotly version and added new Box Plot w......GEMMA now has option to select genotypes Updated dataset select dropdowns to be ordered correctly Fixed dataset select dropdowns for correlations to not show confidential datasets Added Skewness and Kurtosis to Basic Statistics table Fixed Verify and RNA-seq buttons on trait page Temporarily hardcoded Reference page until we get it to link with database | zsloan |
| 2017-05-21 | Merge from the diet branch.... * refactored ./bin/genenetwork2 and /etc/default_settings - better detection of Guix - removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS - removing some default settings, such as PYLMM_COMMAND - rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY - added GUIX_JS_PATH for JS modules * Added documentation on installing binary GN2 * Updated Twitter board to latest version in Guix - it had broken * Updated many tools in the latest Guix profile | Pjotr Prins |
| 2016-12-12 | Moved a bunch of functions out of the GeneralTrait class that didn't need to ......Improved loadings plot on the correlation matrix page to look like GN1's figure (though it's vector and GN1's was static) Removed some unused code from show_trait.py changed appearance of table headers some, though needs a little more work Updated dataset_menu_structure.json | zsloan |
| 2016-09-13 | Fixed the path for the json file in gen_select_dataset.py since it was wrong ......Added "Reset" option to network graph that returns all the nodes/edges Made the visualization options area in the network graph a little wider | zsloan |
| 2016-09-13 | Run scripts from ./wqflask - just like the webserver | Pjotr Prins |
| 2016-09-10 | Comment | Pjotr Prins |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver set......Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py | Pjotr Prins |
| 2016-06-19 | Renamed settings so they are grouped together | Pjotr Prins |
| 2016-06-18 | Changed file permssions to non-executable | Pjotr Prins |
| 2016-06-17 | Conflict | Pjotr Prins |
| 2016-06-17 | Removed trailing spaces in .py and .js files | Pjotr Prins |
| 2016-06-16 | Generating the menu is now obsolete | Pjotr Prins |
| 2016-04-20 | More hard-coded | pjotrp |
| 2016-02-18 | Edited gen_select_dataset to remove confidential datasets...Also hard-coded the removal of Macaque Monkey since I couldn't think of a good way to retroactively check if every dataset in a species is confidential | zsloan |
| 2016-01-29 | Info button should now work for phenotype and genotype datasets | zsloan |
| 2016-01-27 | Added info button to Dataset dropdown on index page...Fixed script that generates dataset dropdown json file to include accession id Fixed dataset link on search results page | zsloan |
| 2015-05-11 | Fixed gen_select_dataset so that it does not include Phenotype and...Genotype groups when the corresponding data sets do not exist Interval Mapping no longer shows up for human traits Fixed the appearance of the mirror links on the main page | zsloan |
| 2014-06-25 | Added Karl's correlation matrix code...Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait | Zachary Sloan |
| 2014-05-05 | Committing a bunch of changes related to integrating GEMMA and...adding the correlation matrix page | Zachary Sloan |
| 2013-08-07 | Fixed things with the dataset dropdowns and mRNA datasets...Improved the templates for a couple pages related to changing user password, etc | Zachary Sloan |
| 2013-07-19 | Created file gen_group_samplelists that iterates through all genofiles...and builds each groups' samplelist | Zachary Sloan |
| 2013-07-18 | Added Amelie's rat data genotypes...Got human mapping mostly working Fixed dataset dropdown menus | Zachary Sloan |
| 2013-07-18 | Merge branch 'master' of https://github.com/zsloan/genenetwork...Conflicts: wqflask/base/webqtlConfigLocal.py wqflask/maintenance/gen_select_dataset.py wqflask/wqflask/static/new/javascript/dataset_menu_structure.json | Zachary Sloan |
| 2013-07-18 | Added to installation notes...Removed webqtlConfigLocal file containing passwords Updated main page dropdown menus (dataset_menu_structure.json) | Zachary Sloan |
| 2013-07-17 | Fixed gen_select_dataset.py...Appended redis installation info to notes | Zachary Sloan |
| 2012-10-25 | Got the Make Default option working on the home page | Zachary Sloan |
| 2012-10-24 | Now builds json datastructure for menus correctly | Zachary Sloan |
| 2012-10-19 | Finished gen_select_dataset.py which generates the json file that defines the...data structure used for the index page select dropdowns | Zachary Sloan |
| 2012-10-19 | Reindented genSelectDatasetJS as gen_select_dataset | Zachary Sloan |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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