| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-06-21 | No longer runs query to get symbol_values_dict when no id_list to fix ↵ | zsloan | |
| occasional error with correlation page | |||
| 2016-06-18 | Logging settings | Pjotr Prins | |
| 2016-06-18 | Logger | Pjotr Prins | |
| 2016-06-18 | Logger: replacing print statements | Pjotr Prins | |
| 2016-06-18 | Changed file permssions to non-executable | Pjotr Prins | |
| 2016-06-17 | Removed trailing spaces in .py and .js files | Pjotr Prins | |
| 2016-06-03 | Changed appearance of tables to more easily differentiate them from the rest ↵ | zsloan | |
| of the page (still not totally pleased with them though) Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A. | |||
| 2016-05-31 | Fixed error when MrnaAssay search results didn't have a geneid | zsloan | |
| 2016-05-31 | Allow the json dir to be in the old location. | Pjotr Prins | |
| 2016-05-26 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| 2016-05-26 | Issue with certain samples (like BXD65a, ones were there are multiple for a ↵ | zsloan | |
| single BXD or whatever) should be fixed for different mapping methods and data set types Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets | |||
| 2016-05-23 | Reaper mapping results are now correct and account for samples with two ↵ | zsloan | |
| names (like BXD65a) R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues. | |||
| 2016-05-18 | Merge branch 'staging' of https://github.com/genenetwork/genenetwork2 | zsloan | |
| 2016-05-18 | Updated dataset selection dropdown menus and fixed error caused by traits ↵ | zsloan | |
| with no description | |||
| 2016-05-17 | Merge branch 'staging' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| 2016-05-13 | Removing ref. to HTMLPATH | Pjotr Prins | |
| 2016-05-13 | WebqtlConfig.py: Constant handling | Pjotr Prins | |
| 2016-05-13 | Fix paths for images | Pjotr Prins | |
| 2016-04-29 | Merge | Pjotr Prins | |
| 2016-04-28 | Added option to export permutation results for mapping page | zsloan | |
| Added data_scale to dataset objects and basic stats table will now check data scale when calculating range Made interval analyst results table work with datatables Changed the appearance of the basic stats table some by giving it a border | |||
| 2016-04-20 | Add file | Pjotr Prins | |
| 2016-04-20 | -a | Pjotr Prins | |
| [PATCH 039/100] Removing commented code | |||
| 2016-04-20 | -a | Pjotr Prins | |
| [PATCH 038/100] Fix compile errors | |||
| 2016-04-20 | [PATCH 037/100] WebQtlConfig: sanitizing naming and used vars | Pjotr Prins | |
| 2016-04-20 | [PATCH 033/100] Refactored file searching | Pjotr Prins | |
| 2016-04-20 | [PATCH 032/100] file locating: error checking is built-in | Pjotr Prins | |
| 2016-04-20 | [PATCH 024/100] Sanitizing file handling | Pjotr Prins | |
| 2016-04-20 | [PATCH 023/100] WIP fixing all paths | Pjotr Prins | |
| 2016-04-19 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| Conflicts: wqflask/base/trait.py | |||
| 2016-04-13 | Moved the code getting the description/location because it was throwing an ↵ | zsloan | |
| error for phenotype traits | |||
| 2016-04-13 | Global search should be able to return description and location columns now | zsloan | |
| 2016-04-11 | Figured out how to load results into dataTable using AJAX, but still need to ↵ | zsloan | |
| get it working with Scroller correctly Added code getting the description, etc to trait.py since it was missed from last commit | |||
| 2016-04-11 | Changed the way trait data is retrieved for the global search page (it now ↵ | zsloan | |
| gets the LRS location repr and other variables needed to display in table during the retrieve_info function in trait.py instead of retrieve_trait_info in dataset.py) This change increases the speed by a bit (85 seconds to 66 seconds for example) Made the column width for location a bit wider for global search page so it doesn't spill onto a second line | |||
| 2016-03-29 | Forgot to add GeneralObject file needed for haplotype analyst in last commit | zsloan | |
| 2016-03-18 | Replaced header with other information in qtl map | zsloan | |
| Began adding menu to qtl map Fixed global search to not retrieve samples (to increase speed) Got the vector plot working again so it can be displayed alongside the gn1-style plot Only display the vector plot when doing GEMMA to speed up (this might not be necessary) | |||
| 2016-03-15 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| 2016-03-15 | Fixed the mapping figure track that lets you zoom into a smaller range | zsloan | |
| Fixed the third party mapping figure tracks to refer to the correct chromosome (before it was always 1) | |||
| 2016-03-14 | Changed the way headers look across all pages | zsloan | |
| Changed the way details are displayed in show trait page Changed search query so that it orders results by symbol | |||
| 2016-03-03 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan | |
| 2016-03-02 | Increased gsearch speed by removing unnecessary query for sample data | zsloan | |
| Still slower than preferable due to having to query the gn1 database for every trait in the search results | |||
| 2016-02-25 | fixed untracked files | zsloan | |
| 2016-02-04 | Most importantly, this commit fixes an issue that caused the trait page to ↵ | zsloan | |
| not work because of the new dataset_menu_structure.json file An Intro section is also added to the header, though for the time being its contents aren't populated and the edit option isn't working | |||
| 2015-12-14 | GN1 mapping full genome figure now correct for pylmm and output to web page | zsloan | |
| 2015-12-12 | Changed loop drawing qtl curve to fix some issues; still need to make it ↵ | zsloan | |
| draw to different chr areas though | |||
| 2015-11-18 | Fixed issue where literature and tissue correlation didn't work | zsloan | |
| Scatterplot matrix feature only appears if user is logged in now Committing current progress on mapping page (it can at least import the file now, but there are still errors) | |||
| 2015-11-09 | Fixed issue that caused mapping to not work; for some reason the path to ↵ | zsloan | |
| pylmm was wrong | |||
| 2015-10-12 | Changed the location filter for correlation page | zsloan | |
| 2015-09-11 | Comment out some excessive stdout spam | DannyArends | |
| 2015-09-10 | Fixed "TypeError: float argument required, not NoneType" about mean. | Lei Yan | |
| Committer: Lei Yan <lei@penguin.uthsc.edu> On branch master | |||
| 2015-08-26 | Fixed issue with colums for the gene global search (still need to change for ↵ | zsloan | |
| phenotype) Fixed issue where LRS and LOD are sometimes labeled incorrectly Changed the header of the trait page Added link to GN1 in header Fixxed an issue that made permutations not work with pylmm Fixed "sign in" button when creating a collection while not logged in | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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