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2015-06-22fixed a few potential security issuesArtem Tarasov
2015-06-18fix all_samples_orderedArtem Tarasov
move duplicated code into a method, handle the case of missing f1/f12 correctly
2015-05-26Merge pull request #58 from lomereiter/ppzsloan
Use NVD3 for bar chart and probability plot
2015-05-23new probability plot (using NVD3 library)Artem Tarasov
* z scores are computed on the client side (using jStat library) * added Shapiro-Wilk test results
2015-05-22Fixed issue where correlation didn't work for human traits (and probably ↵zsloan
some others)
2015-05-21Changed the digits for additive effect and megabases in the search results tablezsloan
2015-05-13combine three similar queries into oneArtem Tarasov
2015-05-13replace multiple tissue queries with a single oneArtem Tarasov
2015-05-13cache datasets for each groupArtem Tarasov
2015-05-12Resolved conflict before commitzsloan
2015-05-12Fix #35Artem Tarasov
* 'aliases' and 'location' are shown only where relevant * descriptions for phenotype datasets are provided at the top
2015-05-11Moved chunksPjotr Prins
2015-05-11Moving pylmm out of the treepjotrp
2015-04-10Added git large file system (the .gitattributes files) and fixed an issue ↵zsloan
where rat trait pages wouldn't work
2015-03-27Changed HTMLPATH in webqtlConfig since I forgot to in the last commit (since ↵zsloan
it used to point to the now-renamed 'web' directory). It obviously also needs to be renamed later, but I'll have to find every place that calls webqtlConfig.HTMLPATH first to do so.
2015-03-26Removed several unused files from the base folder and their references in ↵zsloan
other files
2015-03-25Pair scan image now loads properlyzsloan
2015-03-24Change back port location and home directory location; this should be in ↵zsloan
external settings
2015-03-23Updates to make GN2 work on my version of penguin (ports, and paths)DannyArends
2015-03-17Converting an absolute path to a relative pathDannyArends
2015-01-30Fixed several bugsZachary Sloan
Added legend to bar chart color by trait function Added scatterplot matrix figure Fixed database timeout problem
2014-12-12Added a additive effect column to search result and collection tablesZachary Sloan
Fixed the header so that it looks fine when resizing
2014-11-17Just more changes converting to bootstrap 3Zachary Sloan
2014-10-17Added reference, policies, and links pagesZachary Sloan
Improved the appearance of the header menu and "title bar"
2014-10-02Fixed an error when there's no locus for mRNA expression traitsZachary Sloan
2014-08-21Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-08-21Added the option to display mapping results as either an interval mappingZachary Sloan
or manhattan plot Fixed a few minor bugs
2014-07-21Fixed issue where sample values were ordered on the trait pageZachary Sloan
2014-07-18Merge /home/zas1024/geneLei Yan
Conflicts: wqflask/base/data_set.py
2014-07-18Added outlier highlightingZachary Sloan
Changed order of tabs in statistics panel on trait page Started working on heatmap
2014-07-18Correlation table for phenotypes is workingLei Yan
2014-07-09Updated coffeescript, svg export working fine, interval mapping zoom workingZachary Sloan
2014-06-25Added Karl's correlation matrix codeZachary Sloan
Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait
2014-06-06Implimented Karl Broman's lodchart code for the interval mapping function.Zachary Sloan
Suggestive/significant bars and additive effect curve added
2014-05-05Committing a bunch of changes related to integrating GEMMA andZachary Sloan
adding the correlation matrix page
2014-02-28Committing after creating AnonCollection class and before addingZachary Sloan
remove trait function
2014-02-28Made some changes/comments to Lei's load_genotypes.py fileZachary Sloan
2014-02-27Began working on a TraitCollection.py file that will contain both theZachary Sloan
object for logged in user collections and collections created by anonymous users.
2014-01-30Most of the work is done towards running lmm.py from the command lineZachary Sloan
and storing the results in redis
2014-01-29Limited number of markers in marker regression result table toZachary Sloan
those with a lod score > 2 Did some work towards adding the colored backgrounds to chromosome areas in the manhattan plot Changed the last two chromosomes for human manhattan plots to X and X/Y Started work on writing a script that can independently run the pyLMM code and store the results in redis
2014-01-23Histogram is workingZachary Sloan
Fixed some bug with generating the manhattan plot for the HLC data set
2014-01-03Wrote some code for the histogram figureZachary Sloan
Changed some code in dataset to try and track down the issue with Amelie's file
2013-11-27Clicking a trait in "color by trait" now gets all of its sample valuesZachary Sloan
that will be used to color the bar graph
2013-11-26Made some progress towards getting the traits inside a collection to display ↵Zachary Sloan
on hover
2013-11-25Got the interval mapping results into a tableZachary Sloan
2013-11-01Merge /home/sam/geneZachary Sloan
2013-10-30More work on collectionsSam
2013-10-25Began working on color coding bar chart by extra attributesZachary Sloan
2013-10-15Changed templates to call the header macroZachary Sloan
Correlation page now works with Non-BXD (or whatever group) or All Samples options
2013-10-11Merge /home/lei/geneZachary Sloan
Conflicts: wqflask/maintenance/quick_search_table.py