| Age | Commit message (Expand) | Author |
|---|---|---|
| 2020-09-28 | Convert None to "" in if statement...* wqflask/base/trait.py: Fixes error parsing error: "(GeneNetwork error: float argument required, not NoneType)" | BonfaceKilz |
| 2020-09-18 | Made a bunch of changes to move trait page DataTables initialization to...a separate file (initialize_show_trait_tables.js). The biggest complication was getting the order of attributes in the rows to sync with the order of atribute namees in the column headers. Previously this logic was all in the template. * wqflask/base/webqtlCaseData.py - added attribute first_attr_col as a very awkward solution to passing the column position into the column render function in situations where there are case attribute columns (which can be variable in number) * wqflask/wqflask/show_trait/show_trait.py - Replace "attribute_names" in js_data with "attributes" (which allows the JS access to more information) and also pass new se_exists and has_num_cases variables with js_data, so the javascript has access to whether or not those columns exist in the table * wqflask/wqflask/static/new/javascript/show_trait.js - Change case attribute-related logic to use js_data.attributes instead of js_data.attribute_names * wqflask/wqflask/templates/show_trait.html - Removed table initialization from template * wqflask/wqflask/static/new/javascript/initialize_show_trait_tables.js - new file that initializes tables and reproduces what the template logic used to do with JS logic | zsloan |
| 2020-09-17 | Convert "target_string" to a str type...* wqflask/base/trait.py (retrieve_trait_info): Convert "target_string" to a str, otherwise an exception will be thrown if it's None. | BonfaceKilz |
| 2020-09-17 | Apply pep8...* wqflask/base/trait.py: Apply pep8. * wqflask/utility/authentication_tools.py: Ditto. | BonfaceKilz |
| 2020-08-28 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
| 2020-08-27 | Remove python2 string processing to utf-8...* wqflask/base/trait.py: Remove python2 codecs.BOM_UTF8 methods. * wqflask/wqflask/search_results.py: Remove utf-8 decode method on string. | BonfaceKilz |
| 2020-08-27 | Replace mysqldb's "escape" with the one from utils.db_tools...Mysqldb's escape returns a binary string. Use utils.db_tools which adds an extra step of converting the binary string to a string. | BonfaceKilz |
| 2020-08-27 | Remove redundant methods which are defined elsewhere...* wqflask/base/data_set.py: Delete "create_in_clause", and "mescape" which are defined in "utility.db_tools" | BonfaceKilz |
| 2020-08-27 | Remove unused imports | BonfaceKilz |
| 2020-08-27 | Replace "string.split" & "string.join" with python's inbuilt methods | BonfaceKilz |
| 2020-08-26 | Remove "from __future__ import new_feature" statements...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-future> | BonfaceKilz |
| 2020-08-26 | Replace "__cmp__" with "__eq__" magic method...* wqflask/base/GeneralObject.py: "__cmp__" is no longer used in python3. See: <https://stackoverflow.com/questions/8276983/why-cant-i-use-the-method-cmp-in-python-3-as-for-python-2> | BonfaceKilz |
| 2020-08-26 | Rename "unicode" to "str"...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-unicode> | BonfaceKilz |
| 2020-08-25 | Fixed issue in DatasetType that caused an error when trying to load new...datasets * wqflask/base/data_set.py - Added fetchone() to g.db.execute() which is what was causing the error | zsloan |
| 2020-08-20 | Handle module renames in the standard library...Run: ``` 2to3-3.8 -f imports -w . && \ 2to3-3.8 -f imports2 -w . ``` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-imports> and <https://docs.python.org/2/library/2to3.html#2to3fixer-imports2> | BonfaceKilz |
| 2020-08-20 | Disable python2 QTLReaper...* wqflask/base/data_set.py: Remove usage of "reaper" to load datasets | BonfaceKilz |
| 2020-08-20 | Add backward support for urllib...* wqflask/base/trait.py: Remove unused imports * wqflask/db/call.py (Bench): Add urllib2 fallback for python2 | BonfaceKilz |
| 2020-08-19 | Remove extra whitespace(or add it) from comma separated items...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib> | BonfaceKilz |
| 2020-08-19 | Make Python more idiomatic...Run `2to3-3.8 -f idioms -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-idioms> | BonfaceKilz |
| 2020-08-19 | Handle the rename of urllib and urllib2 to the urllib package...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib> | BonfaceKilz |
| 2020-08-19 | Replace backtick repr with the repr() function...* wqflask/base/trait.py: See <https://docs.python.org/2/library/2to3.html#2to3fixer-repr> | BonfaceKilz |
| 2020-08-19 | Wrap `raise` statements in parenthesis...Run `2to3-3.8 -f raise -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-raise> | BonfaceKilz |
| 2020-08-19 | Replace `izip` with python's built-in equivalent...Run `2to3-3.8 -f itertools -w . && 2to3-3.8 -f itertools_imports -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-itertools_imports> and <https://docs.python.org/2/library/2to3.html#2to3fixer-itertools> | BonfaceKilz |
| 2020-08-19 | Fix dictionary iteration methods...Run `2to3-3.8 -f dict -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-dict> and <https://stackoverflow.com/questions/17695456/why-does-python-3-need-dict-items-to-be-wrapped-with-list> | BonfaceKilz |
| 2020-07-27 | Clean up webqtlCaseData class...* wqflask/base/webqtlCaseData.py (webqtlCaseData): - Remove obsolete 'Object' from Class inheritance - Replace 'str' with 'case_data_string' variable- it collides with python in-builts - Use pythonic 'is Not None' form - Remove redundancy in 'if' forms - Update copyright header | BonfaceKilz |
| 2020-07-27 | Abstract away redundant code into set_dataset_key method...* wqflask/base/data_set.py (Dataset): - Add set_dataset_key - Remove __call__ method | BonfaceKilz |
| 2020-07-27 | Use the correct redis instance inside object...* wqflask/base/data_set.py (DatasetType): Use object's redis instance | BonfaceKilz |
| 2020-07-25 | Removing bimbam check. We'll get rid of bimbam anyway. | Pjotr Prins |
| 2020-07-24 | Merge pull request #409 from BonfaceKilz/Build/add-tests...Build/add tests | zsloan |
| 2020-07-24 | Fixed queries that were wrongly returning Data IDs as Ns | zsloan |
| 2020-07-24 | Remove unreachable conditional...* wqflask/base/GeneralObject.py(__getattr__): remove if statement that is unreachable | BonfaceKilz |
| 2020-07-24 | Inject redis instance into DatasetType class...* wqflask/base/data_set.py(DatasetType): - Rename Redis instance to r to avoid confusion and name collisions - Inject the redis instance into Dataset_Types class to make it easier to test - Rename Dataset_Types class to DatasetType class | BonfaceKilz |
| 2020-07-24 | Apply autopep-8...* wqflask/base/data_set.py: Apply autopep-8 | BonfaceKilz |
| 2020-07-24 | Apply autopep-8...* wqflask/base/GeneralObject.py: Replace tabs with 4 spaces | BonfaceKilz |
| 2020-07-24 | Remove unused import | BonfaceKilz |
| 2020-07-24 | Added binary casting to phenotype trait info query to fix unicode issue | zsloan |
| 2020-07-21 | Fixed issue that caused group codes to be wrong sometimes | zsloan |
| 2020-07-14 | Added binary casting to phenotype trait info query to fix unicode issue | zsloan |
| 2020-07-08 | Removed remaining unused references to the old qtlreaper | zsloan |
| 2020-07-06 | Temporarily commented out the line in trait.py doing the encoding until we fi... | zsloan |
| 2020-07-06 | Fixed some of the logic with how traits are authenticated to avoid situation ... | zsloan |
| 2020-06-29 | Change that hopefully fixes some encoding stuff | zsloan |
| 2020-06-24 | Temporary partial fix to issue of resources without info; need to add somethi... | zsloan |
| 2020-06-22 | Fixed issue with temp traits not working for trait page functions like correl... | zsloan |
| 2020-06-20 | Fixed ports for proxy (though I need to add the port to global variables) and... | zsloan |
| 2020-06-20 | Added some admin functionality and fixed issue with temp traits | zsloan |
| 2020-06-17 | Adding all the authentication stuff | zsloan |
| 2020-06-05 | Commiting other current group/resource management code, plus the new files | zsloan |
| 2020-06-04 | Added back in trait info queries for situations where the proxy isn't running | zsloan |
| 2020-06-04 | Really should have split this into many more commits:...- Now use proxy to pull trait data and hide traits/results that the user doesn't have view permission for - Created a factory method for creating trait ob so it can return None when user doesn't have view permissions (this is why such a large number of files are changed) - Added metadata to permutation export - Added current group management code - Added fixed password verification e-mail code | zsloan |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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