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2016-06-23Refactored dir name dbFunction to dbPjotr Prins
2016-06-22Fixed a couple more errors with the correlation page that occurred when you s...zsloan
2016-06-21No longer runs query to get symbol_values_dict when no id_list to fix occasio...zsloan
2016-06-18Logging settingsPjotr Prins
2016-06-18LoggerPjotr Prins
2016-06-18Logger: replacing print statementsPjotr Prins
2016-06-18Changed file permssions to non-executablePjotr Prins
2016-06-17Removed trailing spaces in .py and .js filesPjotr Prins
2016-06-03Changed appearance of tables to more easily differentiate them from the rest ......Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A. zsloan
2016-05-31Fixed error when MrnaAssay search results didn't have a geneidzsloan
2016-05-31Allow the json dir to be in the old location.Pjotr Prins
2016-05-26Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-05-26Issue with certain samples (like BXD65a, ones were there are multiple for a s......Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets zsloan
2016-05-23Reaper mapping results are now correct and account for samples with two names......R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues. zsloan
2016-05-18Merge branch 'staging' of https://github.com/genenetwork/genenetwork2zsloan
2016-05-18Updated dataset selection dropdown menus and fixed error caused by traits wit...zsloan
2016-05-17Merge branch 'staging' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-05-13Removing ref. to HTMLPATHPjotr Prins
2016-05-13WebqtlConfig.py: Constant handlingPjotr Prins
2016-05-13Fix paths for imagesPjotr Prins
2016-04-29MergePjotr Prins
2016-04-28Added option to export permutation results for mapping page...Added data_scale to dataset objects and basic stats table will now check data scale when calculating range Made interval analyst results table work with datatables Changed the appearance of the basic stats table some by giving it a border zsloan
2016-04-20Add filePjotr Prins
2016-04-20-a...[PATCH 039/100] Removing commented code Pjotr Prins
2016-04-20-a...[PATCH 038/100] Fix compile errors Pjotr Prins
2016-04-20[PATCH 037/100] WebQtlConfig: sanitizing naming and used varsPjotr Prins
2016-04-20[PATCH 033/100] Refactored file searchingPjotr Prins
2016-04-20[PATCH 032/100] file locating: error checking is built-inPjotr Prins
2016-04-20[PATCH 024/100] Sanitizing file handlingPjotr Prins
2016-04-20[PATCH 023/100] WIP fixing all pathsPjotr Prins
2016-04-19Merge branch 'master' of github.com:genenetwork/genenetwork2 into development...Conflicts: wqflask/base/trait.py zsloan
2016-04-13Moved the code getting the description/location because it was throwing an er...zsloan
2016-04-13Global search should be able to return description and location columns nowzsloan
2016-04-11Figured out how to load results into dataTable using AJAX, but still need to ......Added code getting the description, etc to trait.py since it was missed from last commit zsloan
2016-04-11Changed the way trait data is retrieved for the global search page (it now ge......This change increases the speed by a bit (85 seconds to 66 seconds for example) Made the column width for location a bit wider for global search page so it doesn't spill onto a second line zsloan
2016-03-29Forgot to add GeneralObject file needed for haplotype analyst in last commitzsloan
2016-03-18Replaced header with other information in qtl map...Began adding menu to qtl map Fixed global search to not retrieve samples (to increase speed) Got the vector plot working again so it can be displayed alongside the gn1-style plot Only display the vector plot when doing GEMMA to speed up (this might not be necessary) zsloan
2016-03-15Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-03-15Fixed the mapping figure track that lets you zoom into a smaller range...Fixed the third party mapping figure tracks to refer to the correct chromosome (before it was always 1) zsloan
2016-03-14Changed the way headers look across all pages...Changed the way details are displayed in show trait page Changed search query so that it orders results by symbol zsloan
2016-03-03Merge branch 'master' of https://github.com/genenetwork/genenetwork2zsloan
2016-03-02Increased gsearch speed by removing unnecessary query for sample data...Still slower than preferable due to having to query the gn1 database for every trait in the search results zsloan
2016-02-25fixed untracked fileszsloan
2016-02-04Most importantly, this commit fixes an issue that caused the trait page to no......An Intro section is also added to the header, though for the time being its contents aren't populated and the edit option isn't working zsloan
2015-12-14GN1 mapping full genome figure now correct for pylmm and output to web pagezsloan
2015-12-12Changed loop drawing qtl curve to fix some issues; still need to make it draw...zsloan
2015-11-18Fixed issue where literature and tissue correlation didn't work...Scatterplot matrix feature only appears if user is logged in now Committing current progress on mapping page (it can at least import the file now, but there are still errors) zsloan
2015-11-09Fixed issue that caused mapping to not work; for some reason the path to pylm...zsloan
2015-10-12Changed the location filter for correlation pagezsloan
2015-09-11Comment out some excessive stdout spamDannyArends
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