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2015-03-24Change back port location and home directory location; this should be in exte...zsloan
2015-03-23Updates to make GN2 work on my version of penguin (ports, and paths)DannyArends
2015-03-17Converting an absolute path to a relative pathDannyArends
2015-01-30Fixed several bugsZachary Sloan
2014-12-12Added a additive effect column to search result and collection tablesZachary Sloan
2014-11-17Just more changes converting to bootstrap 3Zachary Sloan
2014-10-17Added reference, policies, and links pagesZachary Sloan
2014-10-02Fixed an error when there's no locus for mRNA expression traitsZachary Sloan
2014-08-21Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
2014-08-21Added the option to display mapping results as either an interval mappingZachary Sloan
2014-07-21Fixed issue where sample values were ordered on the trait pageZachary Sloan
2014-07-18Merge /home/zas1024/geneLei Yan
2014-07-18Added outlier highlightingZachary Sloan
2014-07-18Correlation table for phenotypes is workingLei Yan
2014-07-09Updated coffeescript, svg export working fine, interval mapping zoom workingZachary Sloan
2014-06-25Added Karl's correlation matrix codeZachary Sloan
2014-06-06Implimented Karl Broman's lodchart code for the interval mapping function.Zachary Sloan
2014-05-05Committing a bunch of changes related to integrating GEMMA andZachary Sloan
2014-02-28Committing after creating AnonCollection class and before addingZachary Sloan
2014-02-28Made some changes/comments to Lei's load_genotypes.py fileZachary Sloan
2014-02-27Began working on a TraitCollection.py file that will contain both theZachary Sloan
2014-01-30Most of the work is done towards running lmm.py from the command lineZachary Sloan
2014-01-29Limited number of markers in marker regression result table toZachary Sloan
2014-01-23Histogram is workingZachary Sloan
2014-01-03Wrote some code for the histogram figureZachary Sloan
2013-11-27Clicking a trait in "color by trait" now gets all of its sample valuesZachary Sloan
2013-11-26Made some progress towards getting the traits inside a collection to display ...Zachary Sloan
2013-11-25Got the interval mapping results into a tableZachary Sloan
2013-11-01Merge /home/sam/geneZachary Sloan
2013-10-30More work on collectionsSam
2013-10-25Began working on color coding bar chart by extra attributesZachary Sloan
2013-10-15Changed templates to call the header macroZachary Sloan
2013-10-11Merge /home/lei/geneZachary Sloan
2013-10-10Almost have correlation working for non-primary strain/groupLei Yan
2013-10-09Improved some of the code related to the correlation pageLei Yan
2013-10-08Literature correlation works when it is selected as the sortedLei Yan
2013-10-08Did some work with interval mapping page; will use qtl reaper to doZachary Sloan
2013-09-27Added trait links to correlation resultsLei Yan
2013-09-24Did some work towards doing the tissue correlation for all traitsroot
2013-09-24Fixed the db_tools import in mrna_assay_tissue_data.pyZachary Sloan
2013-09-20Tissue correlation results work for sample r/rho correlation pageLei Yan
2013-09-13Merge https://github.com/zsloan/genenetworkLei Yan
2013-08-21Just removed a couple print statementsZachary Sloan
2013-08-15Removed the markers with no variance (and thus no p-values) from theZachary Sloan
2013-08-13Added several test files and the file with the class thatZachary Sloan
2013-08-07Fixed things with the dataset dropdowns and mRNA datasetsZachary Sloan
2013-08-02Fixed a bug related to groups with genofiles (not sure if it makes senseZachary Sloan
2013-07-30Just added some print statements to debug an issue with LMM codeZachary Sloan
2013-07-23Fixed a couple issues with he quick_search_table.py scriptZachary Sloan
2013-07-19Finished integrating code that reads sample list from geno filesZachary Sloan
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