| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-10-09 | Merge pull request #458 from BonfaceKilz/tests/add-extra-tests-for-collections | BonfaceKilz | |
| Tests/add extra tests for collections | |||
| 2020-10-09 | Apply PEP 8 to buffer | BonfaceKilz | |
| * wqflask/wqflask/wgcna/wgcna_analysis.py: Apply pep8 * wqflask/wqflask/collect.py: Ditto * wqflask/base/trait.py: Ditto | |||
| 2020-10-08 | Fixed remaining issue that applies to all dataset types | zsloan | |
| * wqflask/base/data_set.py - Fixed issue where there was an error when trying to take the len of the query results when there were no results | |||
| 2020-10-08 | Fixed issue where new phenotype groups wouldn't be saved to the ↵ | zsloan | |
| self.datasets property because the group name was used as the key (instead of the group name + "Publish", which is the full dataset name for phenotypes) * wqflask/base/data_set.py - Set "group_name" as a separate variable from "name" to avoid it being used as the key in self.datasets | |||
| 2020-09-30 | Removed unused code from TempDataSet class | zsloan | |
| * wqflask/base/data_set.py - TempDataSet class contained some code referring to the SQL DB, but temp traits aren't stored in the SQL DB anymore | |||
| 2020-09-28 | Fix casting error | BonfaceKilz | |
| * wqflask/base/trait.py (retrieve_trait_info): If the description_string or discription_display value return a None object, evaluate to an empty string. Fixes errors related to *len(None)*. | |||
| 2020-09-28 | Convert None to "" in if statement | BonfaceKilz | |
| * wqflask/base/trait.py: Fixes error parsing error: "(GeneNetwork error: float argument required, not NoneType)" | |||
| 2020-08-25 | Fixed issue in DatasetType that caused an error when trying to load new | zsloan | |
| datasets * wqflask/base/data_set.py - Added fetchone() to g.db.execute() which is what was causing the error | |||
| 2020-07-27 | Clean up webqtlCaseData class | BonfaceKilz | |
| * wqflask/base/webqtlCaseData.py (webqtlCaseData): - Remove obsolete 'Object' from Class inheritance - Replace 'str' with 'case_data_string' variable- it collides with python in-builts - Use pythonic 'is Not None' form - Remove redundancy in 'if' forms - Update copyright header | |||
| 2020-07-27 | Abstract away redundant code into set_dataset_key method | BonfaceKilz | |
| * wqflask/base/data_set.py (Dataset): - Add set_dataset_key - Remove __call__ method | |||
| 2020-07-27 | Use the correct redis instance inside object | BonfaceKilz | |
| * wqflask/base/data_set.py (DatasetType): Use object's redis instance | |||
| 2020-07-25 | Removing bimbam check. We'll get rid of bimbam anyway. | Pjotr Prins | |
| 2020-07-24 | Merge pull request #409 from BonfaceKilz/Build/add-tests | zsloan | |
| Build/add tests | |||
| 2020-07-24 | Fixed queries that were wrongly returning Data IDs as Ns | zsloan | |
| 2020-07-24 | Remove unreachable conditional | BonfaceKilz | |
| * wqflask/base/GeneralObject.py(__getattr__): remove if statement that is unreachable | |||
| 2020-07-24 | Inject redis instance into DatasetType class | BonfaceKilz | |
| * wqflask/base/data_set.py(DatasetType): - Rename Redis instance to r to avoid confusion and name collisions - Inject the redis instance into Dataset_Types class to make it easier to test - Rename Dataset_Types class to DatasetType class | |||
| 2020-07-24 | Apply autopep-8 | BonfaceKilz | |
| * wqflask/base/data_set.py: Apply autopep-8 | |||
| 2020-07-24 | Apply autopep-8 | BonfaceKilz | |
| * wqflask/base/GeneralObject.py: Replace tabs with 4 spaces | |||
| 2020-07-24 | Remove unused import | BonfaceKilz | |
| 2020-07-24 | Added binary casting to phenotype trait info query to fix unicode issue | zsloan | |
| 2020-07-21 | Fixed issue that caused group codes to be wrong sometimes | zsloan | |
| 2020-07-14 | Added binary casting to phenotype trait info query to fix unicode issue | zsloan | |
| 2020-07-08 | Removed remaining unused references to the old qtlreaper | zsloan | |
| 2020-07-06 | Temporarily commented out the line in trait.py doing the encoding until we ↵ | zsloan | |
| figure out the real solution to that issue | |||
| 2020-07-06 | Fixed some of the logic with how traits are authenticated to avoid situation ↵ | zsloan | |
| where a trait is authenticated twice | |||
| 2020-06-29 | Change that hopefully fixes some encoding stuff | zsloan | |
| 2020-06-24 | Temporary partial fix to issue of resources without info; need to add ↵ | zsloan | |
| something that automatically inserts resources with default privileges | |||
| 2020-06-22 | Fixed issue with temp traits not working for trait page functions like ↵ | zsloan | |
| correlation or mapping | |||
| 2020-06-20 | Fixed ports for proxy (though I need to add the port to global variables) ↵ | zsloan | |
| and also simplified the check_owner_or_admin function a little | |||
| 2020-06-20 | Added some admin functionality and fixed issue with temp traits | zsloan | |
| 2020-06-17 | Adding all the authentication stuff | zsloan | |
| 2020-06-05 | Commiting other current group/resource management code, plus the new files | zsloan | |
| 2020-06-04 | Added back in trait info queries for situations where the proxy isn't running | zsloan | |
| 2020-06-04 | Really should have split this into many more commits: | zsloan | |
| - Now use proxy to pull trait data and hide traits/results that the user doesn't have view permission for - Created a factory method for creating trait ob so it can return None when user doesn't have view permissions (this is why such a large number of files are changed) - Added metadata to permutation export - Added current group management code - Added fixed password verification e-mail code | |||
| 2020-05-28 | Added lines calling proxy for publish datasets + added some resource redis ↵ | zsloan | |
| queries and a missing import for the hmac functions | |||
| 2020-05-21 | Made search result table width variable again and fixed row highlighting, ↵ | zsloan | |
| though later I need to go through and redo a bunch of CSS stuff | |||
| 2020-05-07 | Fixed blatseq issue and geno correlation issueblatseq_fix | zsloan | |
| 2020-05-07 | Committing current progress on group manager + a minor fix in dataset.py | zsloan | |
| 2020-04-27 | Added timeout for when/if it does the REST API query, so it doesn't hang ↵ | zsloan | |
| indefinitely | |||
| 2020-04-27 | Made change that should allow dataset structure to be loaded from Redis ↵ | zsloan | |
| instead of the JSON file without breaking things | |||
| 2020-04-26 | Removed the code that was still writing the database menu JSON | zsloan | |
| 2020-04-24 | Replaced hard-coded instances of GN2 urls with ones pulled from settings file | zsloan | |
| 2020-04-24 | Made a fix that should prevent the issue where new datasets cause an error ↵ | zsloan | |
| when they're in search results | |||
| 2020-04-06 | Added Mean column for phenotype traits in search and global search result tables | zsloan | |
| 2020-03-27 | Fixed issue where GEMMA wasn't showing up for certain groups | zsloan | |
| 2020-03-27 | Added integration for using RData files with R/qtl, plus some other changes ↵ | zsloan | |
| to how it decides which mapping methods to display on the trait page | |||
| 2020-03-09 | I think this should complete consolidating all the collections code. | zsloan | |
| 2020-03-03 | Forgot to replace code referring to hmac function user_manager | zsloan | |
| 2020-02-07 | Users can now add and do mapping on genotype files that only include a ↵ | zsloan | |
| subset of samples/strains Also filtered the results used by Christian's genome browser, so now it should have an easier time loading when dealing with larger numbers of markers | |||
| 2020-02-06 | Fixed encoding issue | zsloan | |
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |