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2013-06-19Changed QTL parameter name to "get_qtl_info" on trait.py andLei Yan
2013-06-19Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flaskZachary Sloan
2013-06-13Merge /home/sam/gene into flaskZachary Sloan
2013-06-13Fixed issue where too much memory was used as a result of creating aLei Yan
2013-06-12Fixed a couple issues with the template that caused theZachary Sloan
2013-06-11Put trait info for correlation results page into a dictionary insteadLei Yan
2013-05-31Fixed the location column for the quick search pageZachary Sloan
2013-05-30Rewrote some code in get_trait_info in dataset.pyLei Yan
2013-05-28Have correlation values appearing in a table in the templateLei Yan
2013-05-23Worked on rewriting the function in data_set.py that gets the sampleLei Yan
2013-05-23Changed the way the query that gets sample ids is generatedLei Yan
2013-05-23Now calculates correlation values for traits, but not yet in templateLei Yan
2013-05-09Just added some print statements so I can show matrix/vectorZachary Sloan
2013-05-08Worked on correlation pageLei Yan
2013-04-17Created file with pickled SNPIterator (from input.py) dataZachary Sloan
2013-04-09Nick's code works fine with human dataZachary Sloan
2013-04-05Made changes to get pylmm code working with HMDP datasetsZachary Sloan
2013-04-02Committing before splitting code that runs pylmm with plink filesZachary Sloan
2013-04-02pylmm code is running for human data (plink .bed genotype files)Zachary Sloan
2013-03-19Searches work for the full access human datasets with mRNA assayZachary Sloan
2013-03-12Added the script generating probesetfreeze data matrix filesZachary Sloan
2013-03-12Got cashing working with pickleZachary Sloan
2013-03-07Progress bar is now completely workingZachary Sloan
2013-03-02Created generate_probesetfreeze_file to create theZachary Sloan
2013-02-22Added some to notesZachary Sloan
2013-02-14Have marker regression results displaying as a scatterplot (just the points)Zachary Sloan
2013-02-13Fixed some bugs related to getting the marker regression page workingZachary Sloan
2013-02-12Edited marker_regression.py and data_set.py to store the p-valuesZachary Sloan
2013-02-07Added code to marker_regression.py that creates the numpy arrays toZachary Sloan
2013-01-31Changed fd to kw in search_results.py, commented out some linesZachary Sloan
2013-01-25Fixed a few bugs while trying to get the code running on the new serverZachary Sloan
2013-01-18Renamed CorrelationPage.py to show_corr_results.pyZachary Sloan
2013-01-08Created IndChromosome class in species.py and wrote functions forZachary Sloan
2013-01-08Deleted some unnecessary code in marker_regression.py and fixed some bugsZachary Sloan
2013-01-03Began working on marker_regression.py and created Chromosomes classZachary Sloan
2013-01-03Created template for marek regression page and made the compute button directZachary Sloan
2012-12-18Created new file species.py and species class object TheSpeciesZachary Sloan
2012-12-07Got basic statistics in show_trait to display the correct numberZachary Sloan
2012-12-06Added minimum/maximum to basic statistics tableZachary Sloan
2012-12-06Got show_trait running again for MrnaAssay traitsZachary Sloan
2012-12-06Made many small changes to show_trait/data_set/search_results/trait toZachary Sloan
2012-12-05Renamed webqtlTrait.py to trait.pyZachary Sloan
2012-12-05Continued to make changes related to getting rid of cursor/db_connZachary Sloan
2012-12-04Changed parser to allow quotes (i.e. name="rw williams")Zachary Sloan
2012-12-04Began changing references to cursor/db_conn to use sqlalchemyZachary Sloan
2012-11-30Added example of escaping strings now that trasitioning to simple SQLAlchemyZachary Sloan
2012-11-30Started switching to using basic sqlalchemy to handle db connection/queriesZachary Sloan
2012-11-29Changed a number of variables (riset to group, db to dataset)Zachary Sloan
2012-11-28Made some small changes to get code working for genotype searchesZachary Sloan
2012-11-27Created subclass for each main data set type and moved the codeZachary Sloan
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