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2016-09-25tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2Pjotr Prins
2016-09-13Run scripts from ./wqflask - just like the webserverPjotr Prins
2016-09-10Support for running maintenance scripts so they can pick up all webserver set......Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py Pjotr Prins
2016-09-02Added Network Graph feature that uses cytoscape.js. Currently you can view GN......Fixed issue that caused error with correlation page zsloan
2016-08-24Replaced post-publication description with pre-publication description for co......Fixed table style for mapping results and interval analyst tables and added additive/dominance effect columns to the former Fixed mapping figure X-axis to accurately label Centimorgans vs Megabases (previously it would always say Megabases) Removed the "Sequence Site" marker from mapping result figure when mapping with genetics (centimorgans) scale Removed some unused javascript libary imports from search/global search pages zsloan
2016-08-16Users can now select specific traits from collection when using collection to......To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url Duplicate traits can no longer by added to collections Fixed the digits for a few table columns in collection (additive effect, etc). zsloan
2016-08-05Fixed issue that caused some interval mapping results to be wrong; the cause ......Added a message to the Add to Collection page warning users that anonymous collections will only be stored for 5 days Updated genofiles zsloan
2016-07-27Problem with phenotype traits should be fixed nowzsloan
2016-06-26gn_server: simplifyPjotr Prins
2016-06-26gn_server: simplifyPjotr Prins
2016-06-26gn_server: introduced one new query to fetch a dataset record and force fetch...Pjotr Prins
2016-06-26Resolve conflictsPjotr Prins
2016-06-24Removed function 'get_info' in trait.py that was never used and reomved 'get_...zsloan
2016-06-24Log: and document SQL callsPjotr Prins
2016-06-23Logger: SQLPjotr Prins
2016-06-23Logger: SQLPjotr Prins
2016-06-23Log: SQL queriesPjotr Prins
2016-06-23Add fetchall iteratorPjotr Prins
2016-06-23Removed dependency on dataset_menu_structure.jsonPjotr Prins
2016-06-23Backend: moved methods into call modulePjotr Prins
2016-06-23Refactored dir name dbFunction to dbPjotr Prins
2016-06-22Fixed a couple more errors with the correlation page that occurred when you s...zsloan
2016-06-21No longer runs query to get symbol_values_dict when no id_list to fix occasio...zsloan
2016-06-18Logging settingsPjotr Prins
2016-06-18LoggerPjotr Prins
2016-06-18Logger: replacing print statementsPjotr Prins
2016-06-18Changed file permssions to non-executablePjotr Prins
2016-06-17Removed trailing spaces in .py and .js filesPjotr Prins
2016-06-03Changed appearance of tables to more easily differentiate them from the rest ......Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A. zsloan
2016-05-31Fixed error when MrnaAssay search results didn't have a geneidzsloan
2016-05-31Allow the json dir to be in the old location.Pjotr Prins
2016-05-26Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-05-26Issue with certain samples (like BXD65a, ones were there are multiple for a s......Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets zsloan
2016-05-23Reaper mapping results are now correct and account for samples with two names......R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues. zsloan
2016-05-18Merge branch 'staging' of https://github.com/genenetwork/genenetwork2zsloan
2016-05-18Updated dataset selection dropdown menus and fixed error caused by traits wit...zsloan
2016-05-17Merge branch 'staging' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-05-13Removing ref. to HTMLPATHPjotr Prins
2016-05-13WebqtlConfig.py: Constant handlingPjotr Prins
2016-05-13Fix paths for imagesPjotr Prins
2016-04-29MergePjotr Prins
2016-04-28Added option to export permutation results for mapping page...Added data_scale to dataset objects and basic stats table will now check data scale when calculating range Made interval analyst results table work with datatables Changed the appearance of the basic stats table some by giving it a border zsloan
2016-04-20Add filePjotr Prins
2016-04-20-a...[PATCH 039/100] Removing commented code Pjotr Prins
2016-04-20-a...[PATCH 038/100] Fix compile errors Pjotr Prins
2016-04-20[PATCH 037/100] WebQtlConfig: sanitizing naming and used varsPjotr Prins
2016-04-20[PATCH 033/100] Refactored file searchingPjotr Prins
2016-04-20[PATCH 032/100] file locating: error checking is built-inPjotr Prins
2016-04-20[PATCH 024/100] Sanitizing file handlingPjotr Prins
2016-04-20[PATCH 023/100] WIP fixing all pathsPjotr Prins
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