genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2013-04-05	Made changes to get pylmm code working with HMDP datasets	Zachary Sloan
2013-04-02	Committing before splitting code that runs pylmm with plink files	Zachary Sloan
2013-04-02	pylmm code is running for human data (plink .bed genotype files)	Zachary Sloan
2013-03-19	Searches work for the full access human datasets with mRNA assay	Zachary Sloan
2013-03-12	Added the script generating probesetfreeze data matrix files	Zachary Sloan
2013-03-12	Got cashing working with pickle	Zachary Sloan
2013-03-07	Progress bar is now completely working	Zachary Sloan
2013-03-02	Created generate_probesetfreeze_file to create the	Zachary Sloan
2013-02-22	Added some to notes	Zachary Sloan
2013-02-14	Have marker regression results displaying as a scatterplot (just the points)	Zachary Sloan
2013-02-13	Fixed some bugs related to getting the marker regression page working	Zachary Sloan
2013-02-12	Edited marker_regression.py and data_set.py to store the p-values	Zachary Sloan
2013-02-07	Added code to marker_regression.py that creates the numpy arrays to	Zachary Sloan
2013-01-31	Changed fd to kw in search_results.py, commented out some lines	Zachary Sloan
2013-01-25	Fixed a few bugs while trying to get the code running on the new server	Zachary Sloan
2013-01-18	Renamed CorrelationPage.py to show_corr_results.py	Zachary Sloan
2013-01-08	Created IndChromosome class in species.py and wrote functions for	Zachary Sloan
2013-01-08	Deleted some unnecessary code in marker_regression.py and fixed some bugs	Zachary Sloan
2013-01-03	Began working on marker_regression.py and created Chromosomes class	Zachary Sloan
2013-01-03	Created template for marek regression page and made the compute button direct	Zachary Sloan
2012-12-18	Created new file species.py and species class object TheSpecies	Zachary Sloan
2012-12-07	Got basic statistics in show_trait to display the correct number	Zachary Sloan
2012-12-06	Added minimum/maximum to basic statistics table	Zachary Sloan
2012-12-06	Got show_trait running again for MrnaAssay traits	Zachary Sloan
2012-12-06	Made many small changes to show_trait/data_set/search_results/trait to	Zachary Sloan
2012-12-05	Renamed webqtlTrait.py to trait.py	Zachary Sloan
2012-12-05	Continued to make changes related to getting rid of cursor/db_conn	Zachary Sloan
2012-12-04	Changed parser to allow quotes (i.e. name="rw williams")	Zachary Sloan
2012-12-04	Began changing references to cursor/db_conn to use sqlalchemy	Zachary Sloan
2012-11-30	Added example of escaping strings now that trasitioning to simple SQLAlchemy	Zachary Sloan
2012-11-30	Started switching to using basic sqlalchemy to handle db connection/queries	Zachary Sloan
2012-11-29	Changed a number of variables (riset to group, db to dataset)	Zachary Sloan
2012-11-28	Made some small changes to get code working for genotype searches	Zachary Sloan
2012-11-27	Created subclass for each main data set type and moved the code	Zachary Sloan
2012-11-27	Renamed webqtlDataSet.py to data_set.py	Zachary Sloan
2012-10-30	Worked on search_result.py code related to adding clause item to queries	Zachary Sloan
2012-10-26	Got search page working for mice with a single gene search	Zachary Sloan
2012-10-25	Worked on search page code; got to the part that actually does the search	Zachary Sloan
2012-10-24	Now builds json datastructure for menus correctly	Zachary Sloan
2012-10-23	Finished coffeescript that handles the home page dataset selection dropdowns	Zachary Sloan
2012-09-28	Removed show_trait_page.py and moved relevant code over to DataEditingPage.py...	Zachary Sloan
2012-09-28	Finished getting extra attributes to display correctly in the trait data table	Zachary Sloan
2012-09-27	Worked on getting attributes in the SampleList object to display data properl...	Zachary Sloan
2012-09-25	Got trait data page running for human dataset, changed list of sample objects...	Zachary Sloan
2012-09-25	Fixed issue with parent strains appearing twice and began replacing variable ...	Zachary Sloan
2012-09-19	Made pearson/spearman options disappear if lit correlation is chosen, began t...	Zachary Sloan
2012-09-14	Got the dynamic javascript stats table working	Zachary Sloan
2012-09-13	Worked on improving readData and informativeStrains functions in webqtlFormDa...	Zachary Sloan
2012-09-12	Worked towards correctly passing form data to correlation page and addressed ...	Zachary Sloan
2012-09-07	Worked with passing form data to correlation page	Zachary Sloan