index
:
genenetwork2
acenteno
authentication_test
blatseq_fix
chores/code-refactoring
chores/lmdb-integration
chores/replace-cdns
chores/script-textfile-generator
correlations-return-fewer-results
debug-too-many-connections-error
decouple_tools_and_wqflask_app
development
epysode
feature/search-history
feature/textfile-generator
gn-master
guix-shell
hook-up-auth-to-traits-page
itp_covariate_testing
jupyter_notebooks_ui
lmdb-code/refactoring
master
notebooks_api
oauth2-migrate-user-details-and-data
partial-correlations
partial_corr_ui_rework
pcorrs_targets
penguin2
phewas
production
proxy-integration
refactor-configurations
refactor-data_set_py-20220920
revert-366-360_update_htmlgen
rework-genotype-linking
run-corrs-in-external-process
stable
testing
GeneNetwork (2nd generation)
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Author
2013-06-20
Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask
Zachary Sloan
2013-06-19
Fixed issue where the Mean Expr, Max LRS, and Max LRS Location columns
Lei Yan
2013-06-19
Merge branch 'flask' of git://github.com/zsloan/genenetwork into flask
Lei Yan
2013-06-19
Changed QTL parameter name to "get_qtl_info" on trait.py and
Lei Yan
2013-06-19
Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask
Zachary Sloan
2013-06-13
Merge /home/sam/gene into flask
Zachary Sloan
2013-06-13
Fixed issue where too much memory was used as a result of creating a
Lei Yan
2013-06-12
Fixed a couple issues with the template that caused the
Zachary Sloan
2013-06-11
Put trait info for correlation results page into a dictionary instead
Lei Yan
2013-05-31
Fixed the location column for the quick search page
Zachary Sloan
2013-05-30
Rewrote some code in get_trait_info in dataset.py
Lei Yan
2013-05-28
Have correlation values appearing in a table in the template
Lei Yan
2013-05-23
Worked on rewriting the function in data_set.py that gets the sample
Lei Yan
2013-05-23
Changed the way the query that gets sample ids is generated
Lei Yan
2013-05-23
Now calculates correlation values for traits, but not yet in template
Lei Yan
2013-05-09
Just added some print statements so I can show matrix/vector
Zachary Sloan
2013-05-08
Worked on correlation page
Lei Yan
2013-04-17
Created file with pickled SNPIterator (from input.py) data
Zachary Sloan
2013-04-09
Nick's code works fine with human data
Zachary Sloan
2013-04-05
Made changes to get pylmm code working with HMDP datasets
Zachary Sloan
2013-04-02
Committing before splitting code that runs pylmm with plink files
Zachary Sloan
2013-04-02
pylmm code is running for human data (plink .bed genotype files)
Zachary Sloan
2013-03-19
Searches work for the full access human datasets with mRNA assay
Zachary Sloan
2013-03-12
Added the script generating probesetfreeze data matrix files
Zachary Sloan
2013-03-12
Got cashing working with pickle
Zachary Sloan
2013-03-07
Progress bar is now completely working
Zachary Sloan
2013-03-02
Created generate_probesetfreeze_file to create the
Zachary Sloan
2013-02-22
Added some to notes
Zachary Sloan
2013-02-14
Have marker regression results displaying as a scatterplot (just the points)
Zachary Sloan
2013-02-13
Fixed some bugs related to getting the marker regression page working
Zachary Sloan
2013-02-12
Edited marker_regression.py and data_set.py to store the p-values
Zachary Sloan
2013-02-07
Added code to marker_regression.py that creates the numpy arrays to
Zachary Sloan
2013-01-31
Changed fd to kw in search_results.py, commented out some lines
Zachary Sloan
2013-01-25
Fixed a few bugs while trying to get the code running on the new server
Zachary Sloan
2013-01-18
Renamed CorrelationPage.py to show_corr_results.py
Zachary Sloan
2013-01-08
Created IndChromosome class in species.py and wrote functions for
Zachary Sloan
2013-01-08
Deleted some unnecessary code in marker_regression.py and fixed some bugs
Zachary Sloan
2013-01-03
Began working on marker_regression.py and created Chromosomes class
Zachary Sloan
2013-01-03
Created template for marek regression page and made the compute button direct
Zachary Sloan
2012-12-18
Created new file species.py and species class object TheSpecies
Zachary Sloan
2012-12-07
Got basic statistics in show_trait to display the correct number
Zachary Sloan
2012-12-06
Added minimum/maximum to basic statistics table
Zachary Sloan
2012-12-06
Got show_trait running again for MrnaAssay traits
Zachary Sloan
2012-12-06
Made many small changes to show_trait/data_set/search_results/trait to
Zachary Sloan
2012-12-05
Renamed webqtlTrait.py to trait.py
Zachary Sloan
2012-12-05
Continued to make changes related to getting rid of cursor/db_conn
Zachary Sloan
2012-12-04
Changed parser to allow quotes (i.e. name="rw williams")
Zachary Sloan
2012-12-04
Began changing references to cursor/db_conn to use sqlalchemy
Zachary Sloan
2012-11-30
Added example of escaping strings now that trasitioning to simple SQLAlchemy
Zachary Sloan
2012-11-30
Started switching to using basic sqlalchemy to handle db connection/queries
Zachary Sloan
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