index
:
genenetwork2
acenteno
authentication_test
blatseq_fix
chores/code-refactoring
chores/lmdb-integration
chores/replace-cdns
chores/script-textfile-generator
correlations-return-fewer-results
debug-too-many-connections-error
decouple_tools_and_wqflask_app
development
epysode
feature/search-history
feature/textfile-generator
gn-master
guix-shell
hook-up-auth-to-traits-page
itp_covariate_testing
jupyter_notebooks_ui
lmdb-code/refactoring
master
notebooks_api
oauth2-migrate-user-details-and-data
partial-correlations
partial_corr_ui_rework
pcorrs_targets
penguin2
phewas
production
proxy-integration
refactor-configurations
refactor-data_set_py-20220920
revert-366-360_update_htmlgen
rework-genotype-linking
run-corrs-in-external-process
stable
testing
GeneNetwork (2nd generation)
about
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Author
2013-08-13
Added several test files and the file with the class that
Zachary Sloan
2013-08-07
Fixed things with the dataset dropdowns and mRNA datasets
Zachary Sloan
2013-08-02
Fixed a bug related to groups with genofiles (not sure if it makes sense
Zachary Sloan
2013-07-30
Just added some print statements to debug an issue with LMM code
Zachary Sloan
2013-07-23
Fixed a couple issues with he quick_search_table.py script
Zachary Sloan
2013-07-19
Finished integrating code that reads sample list from geno files
Zachary Sloan
2013-07-19
Created file gen_group_samplelists that iterates through all genofiles
Zachary Sloan
2013-07-18
Added Amelie's rat data genotypes
Zachary Sloan
2013-07-18
Merge branch 'master' of https://github.com/zsloan/genenetwork
Zachary Sloan
2013-07-18
Added to installation notes
Zachary Sloan
2013-07-17
Fixed gen_select_dataset.py
Zachary Sloan
2013-07-16
Wrote code that can get a dataset's type for every single GN
Zachary Sloan
2013-07-12
Rewrote code related to getting the tissue correlation column to display
Lei Yan
2013-07-03
Merge /home/zas1024/gene
Lei Yan
2013-06-27
Created a group manager page where user administrators can create
Zachary Sloan
2013-06-26
Moved code creating DataSets object to a function in dataset.py
Zachary Sloan
2013-06-26
Got code that creates DataSets object running
Zachary Sloan
2013-06-25
Added DataSets class to dataset.py that will be used to create list of
Zachary Sloan
2013-06-25
Merge git://github.com/zsloan/genenetwork into flask
Lei Yan
2013-06-21
Fixed bug where cursor was still being used in query
Zachary Sloan
2013-06-20
Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask
Zachary Sloan
2013-06-19
Moved the normalize_values function to separate file corr_result_helpers.py
Lei Yan
2013-06-19
Fixed issue where the Mean Expr, Max LRS, and Max LRS Location columns
Lei Yan
2013-06-19
Merge branch 'flask' of git://github.com/zsloan/genenetwork into flask
Lei Yan
2013-06-19
Changed QTL parameter name to "get_qtl_info" on trait.py and
Lei Yan
2013-06-19
Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask
Zachary Sloan
2013-06-13
Merge /home/sam/gene into flask
Zachary Sloan
2013-06-13
Fixed issue where too much memory was used as a result of creating a
Lei Yan
2013-06-12
Fixed a couple issues with the template that caused the
Zachary Sloan
2013-06-11
Put trait info for correlation results page into a dictionary instead
Lei Yan
2013-05-31
Fixed the location column for the quick search page
Zachary Sloan
2013-05-30
Rewrote some code in get_trait_info in dataset.py
Lei Yan
2013-05-28
Have correlation values appearing in a table in the template
Lei Yan
2013-05-23
Worked on rewriting the function in data_set.py that gets the sample
Lei Yan
2013-05-23
Changed the way the query that gets sample ids is generated
Lei Yan
2013-05-23
Now calculates correlation values for traits, but not yet in template
Lei Yan
2013-05-09
Just added some print statements so I can show matrix/vector
Zachary Sloan
2013-05-08
Worked on correlation page
Lei Yan
2013-04-17
Created file with pickled SNPIterator (from input.py) data
Zachary Sloan
2013-04-09
Nick's code works fine with human data
Zachary Sloan
2013-04-05
Made changes to get pylmm code working with HMDP datasets
Zachary Sloan
2013-04-02
Committing before splitting code that runs pylmm with plink files
Zachary Sloan
2013-04-02
pylmm code is running for human data (plink .bed genotype files)
Zachary Sloan
2013-03-19
Searches work for the full access human datasets with mRNA assay
Zachary Sloan
2013-03-12
Added the script generating probesetfreeze data matrix files
Zachary Sloan
2013-03-12
Got cashing working with pickle
Zachary Sloan
2013-03-07
Progress bar is now completely working
Zachary Sloan
2013-03-02
Created generate_probesetfreeze_file to create the
Zachary Sloan
2013-02-22
Added some to notes
Zachary Sloan
2013-02-14
Have marker regression results displaying as a scatterplot (just the points)
Zachary Sloan
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