| Age | Commit message (Expand) | Author |
|---|---|---|
| 2015-05-12 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | pjotrp |
| 2015-05-12 | Fix #35...* 'aliases' and 'location' are shown only where relevant * descriptions for phenotype datasets are provided at the top | Artem Tarasov |
| 2015-05-11 | Moved chunks | Pjotr Prins |
| 2015-05-11 | Moving pylmm out of the tree | pjotrp |
| 2015-04-10 | Added git large file system (the .gitattributes files) and fixed an issue whe... | zsloan |
| 2015-03-27 | Changed HTMLPATH in webqtlConfig since I forgot to in the last commit (since ... | zsloan |
| 2015-03-26 | Removed several unused files from the base folder and their references in oth... | zsloan |
| 2015-03-25 | Pair scan image now loads properly | zsloan |
| 2015-03-24 | Change back port location and home directory location; this should be in exte... | zsloan |
| 2015-03-23 | Updates to make GN2 work on my version of penguin (ports, and paths) | DannyArends |
| 2015-03-17 | Converting an absolute path to a relative path | DannyArends |
| 2015-01-30 | Fixed several bugs...Added legend to bar chart color by trait function Added scatterplot matrix figure Fixed database timeout problem | Zachary Sloan |
| 2014-12-12 | Added a additive effect column to search result and collection tables...Fixed the header so that it looks fine when resizing | Zachary Sloan |
| 2014-11-17 | Just more changes converting to bootstrap 3 | Zachary Sloan |
| 2014-10-17 | Added reference, policies, and links pages...Improved the appearance of the header menu and "title bar" | Zachary Sloan |
| 2014-10-02 | Fixed an error when there's no locus for mRNA expression traits | Zachary Sloan |
| 2014-08-21 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master | Lei Yan |
| 2014-08-21 | Added the option to display mapping results as either an interval mapping...or manhattan plot Fixed a few minor bugs | Zachary Sloan |
| 2014-07-21 | Fixed issue where sample values were ordered on the trait page | Zachary Sloan |
| 2014-07-18 | Merge /home/zas1024/gene...Conflicts: wqflask/base/data_set.py | Lei Yan |
| 2014-07-18 | Added outlier highlighting...Changed order of tabs in statistics panel on trait page Started working on heatmap | Zachary Sloan |
| 2014-07-18 | Correlation table for phenotypes is working | Lei Yan |
| 2014-07-09 | Updated coffeescript, svg export working fine, interval mapping zoom working | Zachary Sloan |
| 2014-06-25 | Added Karl's correlation matrix code...Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait | Zachary Sloan |
| 2014-06-06 | Implimented Karl Broman's lodchart code for the interval mapping function....Suggestive/significant bars and additive effect curve added | Zachary Sloan |
| 2014-05-05 | Committing a bunch of changes related to integrating GEMMA and...adding the correlation matrix page | Zachary Sloan |
| 2014-02-28 | Committing after creating AnonCollection class and before adding...remove trait function | Zachary Sloan |
| 2014-02-28 | Made some changes/comments to Lei's load_genotypes.py file | Zachary Sloan |
| 2014-02-27 | Began working on a TraitCollection.py file that will contain both the...object for logged in user collections and collections created by anonymous users. | Zachary Sloan |
| 2014-01-30 | Most of the work is done towards running lmm.py from the command line...and storing the results in redis | Zachary Sloan |
| 2014-01-29 | Limited number of markers in marker regression result table to...those with a lod score > 2 Did some work towards adding the colored backgrounds to chromosome areas in the manhattan plot Changed the last two chromosomes for human manhattan plots to X and X/Y Started work on writing a script that can independently run the pyLMM code and store the results in redis | Zachary Sloan |
| 2014-01-23 | Histogram is working...Fixed some bug with generating the manhattan plot for the HLC data set | Zachary Sloan |
| 2014-01-03 | Wrote some code for the histogram figure...Changed some code in dataset to try and track down the issue with Amelie's file | Zachary Sloan |
| 2013-11-27 | Clicking a trait in "color by trait" now gets all of its sample values...that will be used to color the bar graph | Zachary Sloan |
| 2013-11-26 | Made some progress towards getting the traits inside a collection to display ... | Zachary Sloan |
| 2013-11-25 | Got the interval mapping results into a table | Zachary Sloan |
| 2013-11-01 | Merge /home/sam/gene | Zachary Sloan |
| 2013-10-30 | More work on collections | Sam |
| 2013-10-25 | Began working on color coding bar chart by extra attributes | Zachary Sloan |
| 2013-10-15 | Changed templates to call the header macro...Correlation page now works with Non-BXD (or whatever group) or All Samples options | Zachary Sloan |
| 2013-10-11 | Merge /home/lei/gene...Conflicts: wqflask/maintenance/quick_search_table.py | Zachary Sloan |
| 2013-10-10 | Almost have correlation working for non-primary strain/group...There's just some issue with parents/f1s not being included if you select non-BXD (or whatever the group is). All Samples, however does work. | Lei Yan |
| 2013-10-09 | Improved some of the code related to the correlation page...For example, changed the two functions getting gene symbols and ids for a dataset into one function that can take a column name as a parameter | Lei Yan |
| 2013-10-08 | Literature correlation works when it is selected as the sorted...correlation type (that is, when it is run again all traits in a database) Added a function to data_set.py that gets all the gene_ids in the data set. Not sure if having a separate function for getting the gene_ids and another for getting the gene symbols makes sense. | Lei Yan |
| 2013-10-08 | Did some work with interval mapping page; will use qtl reaper to do...the mapping, since it is reliable/fast and avoids us having to rewrite from scratch using something like r/qtl | Zachary Sloan |
| 2013-09-27 | Added trait links to correlation results...Began adding the code that does the initial sort by literature correlation | Lei Yan |
| 2013-09-24 | Did some work towards doing the tissue correlation for all traits...in a dataset (in order to sort by tissue correlation instead of sample correlation). | root |
| 2013-09-24 | Fixed the db_tools import in mrna_assay_tissue_data.py...Added file for the interval mapping page and wrote code that gets/sets some parameters | Zachary Sloan |
| 2013-09-20 | Tissue correlation results work for sample r/rho correlation page...and are written to the template | Lei Yan |
| 2013-09-13 | Merge https://github.com/zsloan/genenetwork...Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py | Lei Yan |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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