| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-08-12 | Fix the way the study_sample_lists path is set and checked | zsloan | |
| 2021-08-12 | add function for reading in JSON file that lists sample lists unique to each ↵ | zsloan | |
| study within a group (in this case only BXD Longevity for now) | |||
| 2021-06-17 | delete loggers and comments | Alexander Kabui | |
| 2021-06-17 | sort sample name by sample_ids | Alexander Kabui | |
| 2021-06-17 | remove unused functions + minor fixes | Alexander Kabui | |
| 2021-06-17 | minor fix | Alexander Kabui | |
| 2021-06-17 | pep8 formatting | Alexander Kabui | |
| 2021-06-17 | add query for fetching probeset data | Alexander Kabui | |
| 2021-06-16 | Changed the function jsonable in trait.py to return a couple extra fields + ↵ | zsloan | |
| take dataset as an optional argument (to avoid having to pointlessly create it) | |||
| 2021-06-16 | Added function as_dict to data_set.py for situations where we don't want to ↵ | zsloan | |
| pass around the whole dataset object | |||
| 2021-05-10 | Merge branch 'testing' into feature/integrate-correlation-api | Alexander Kabui | |
| 2021-05-10 | add previous endpoint for correlation | Alexander Kabui | |
| 2021-05-05 | base: species: Remove redundant assignment | BonfaceKilz | |
| 2021-05-05 | base: chromosomes: Fetch the chromosomes lazily | BonfaceKilz | |
| 2021-05-05 | base: species: Rewrite Chromosomes using a dataclass | BonfaceKilz | |
| 2021-05-05 | base: species: Rewrite IndChromosome using a dataclass | BonfaceKilz | |
| 2021-05-05 | base: trait: Remove logging information | BonfaceKilz | |
| The log adds unnecessary noise in addition to creating unwanted side-effects. | |||
| 2021-05-05 | base: species: Rewrite TheSpecies class using a dataclass | BonfaceKilz | |
| 2021-05-05 | base: species: Remove unused import | BonfaceKilz | |
| 2021-05-05 | base: species: Format SQL queries | BonfaceKilz | |
| 2021-04-30 | autopep8: Run autopep8 100 times with target rules | BonfaceKilz | |
| Rules used are: E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,E242, E251,E252,E26,E265,E266,E27,E301,E302,E303,E304,E305,E306, E401,E501,E70,E701,W291,W292,W293,W391,W504,E101,E11,E121, E122,E123,E124,E125,E126,E127,E128,E129,E131,E133 | |||
| 2021-04-30 | autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133 | BonfaceKilz | |
| 2021-04-30 | autopep8: Fix W504 | BonfaceKilz | |
| 2021-04-30 | autopep8: Fix W291, W292, W293, W391 | BonfaceKilz | |
| 2021-04-30 | autopep8: Fix E501 | BonfaceKilz | |
| 2021-04-30 | autopep8: Fix E301,E302,E303,E304,E305,E306 | BonfaceKilz | |
| 2021-04-30 | autopep8: Fix E20-E27 | BonfaceKilz | |
| Run: python -m autopep8 --in-place --recrusive ./ --select\ E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,\ E242,E251,E252,E26,E265,E266,E27 -p 3 | |||
| 2021-04-29 | Merge branch 'testing' into Feature/Add-upload-data-forms | BonfaceKilz | |
| 2021-04-29 | Run `sed -i 's/(object)//g'` | BonfaceKilz | |
| See: https://is.gd/pL7IJF Ran: find . \( -type d -name .git -prune \) -o -type f -print0 | xargs -0 sed -i 's/(object)//g' | |||
| 2021-04-29 | base: trait: Remove unused function | BonfaceKilz | |
| * wqflask/base/trait.py (jsonable_table_row): Delete it. | |||
| 2021-04-29 | base: data_set: Remove unused method | BonfaceKilz | |
| * wqflask/base/data_set.py (Dataset.get_accession_id): Delete it. | |||
| 2021-04-29 | base: data_set: Apply pep-8 | BonfaceKilz | |
| 2021-04-29 | base: data_set: Remove unused method | BonfaceKilz | |
| * wqflask/base/data_set.py (riset): Delete class method. | |||
| 2021-04-29 | base: data_set: Rewrite data_set using @dataclass | BonfaceKilz | |
| @dataclasses should be used to hold only data. Since dataset only encapsulates data, re-writing it using a dataclass makes it more readable and easier to follow. | |||
| 2021-04-28 | Added something to jsonable in trait.py to account for temp traits (this is ↵ | zsloan | |
| necessary for them to show up correctly when selecting traits from collections in pop-up windows, like when selecting cofactors for mapping) | |||
| 2021-04-26 | fix:remove debug statements and commented code | Alexander Kabui | |
| 2021-04-23 | debugging for fetching probe data | Alexander Kabui | |
| 2021-04-23 | Remove stale comments | BonfaceKilz | |
| 2021-04-20 | refactor code for iterating mrna tissue data | Alexander Kabui | |
| 2021-04-19 | Removed unused code | zsloan | |
| 2021-03-17 | Added the RRID urls for mouse and rat to webqtlConfig | zsloan | |
| 2021-03-03 | Checked if pre_publication_description is NULL, because there was an error ↵ | zsloan | |
| resulting from a trait missing both pre_publication_description and pubmed ID | |||
| 2021-02-18 | Changed DEFAULT_PERMISSIONS AND SUPER_PERMISSIONS to not have permissions be ↵ | zsloan | |
| lists (I think the proxy expects them to not be lists, but then returns them as lists; need to check about this) | |||
| 2021-02-18 | Fixed missing colon | zsloan | |
| 2021-02-18 | Fixed checking permissions in trait.py | zsloan | |
| 2021-02-18 | Fixed SUPER_PRIVILEGES and DEFAULT_PRIVILEGES | zsloan | |
| 2021-02-11 | Removed some log statements | zsloan | |
| 2021-02-11 | Ensure trait description_display is set | zsloan | |
| 2020-12-07 | Changed the logic in create_trait so that permissions should always be set, ↵ | zsloan | |
| and added an assert that 'name' is passed instead of using if/else, since it should always be passed | |||
| 2020-12-01 | Merge pull request #482 from zsloan/feature/corr_table_changes | zsloan | |
| Feature/corr table changes | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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