| Age | Commit message (Expand) | Author |
|---|
| 2016-05-31 | Fixed error when MrnaAssay search results didn't have a geneid | zsloan |
| 2016-05-31 | Allow the json dir to be in the old location. | Pjotr Prins |
| 2016-05-26 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan |
| 2016-05-26 | Issue with certain samples (like BXD65a, ones were there are multiple for a s......Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments)
Fixed error when searching genotype data sets
| zsloan |
| 2016-05-23 | Reaper mapping results are now correct and account for samples with two names......R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues.
| zsloan |
| 2016-05-18 | Merge branch 'staging' of https://github.com/genenetwork/genenetwork2 | zsloan |
| 2016-05-18 | Updated dataset selection dropdown menus and fixed error caused by traits wit... | zsloan |
| 2016-05-17 | Merge branch 'staging' of github.com:genenetwork/genenetwork2 into development | zsloan |
| 2016-05-13 | Removing ref. to HTMLPATH | Pjotr Prins |
| 2016-05-13 | WebqtlConfig.py: Constant handling | Pjotr Prins |
| 2016-05-13 | Fix paths for images | Pjotr Prins |
| 2016-04-29 | Merge | Pjotr Prins |
| 2016-04-28 | Added option to export permutation results for mapping page...Added data_scale to dataset objects and basic stats table will now check data scale when calculating range
Made interval analyst results table work with datatables
Changed the appearance of the basic stats table some by giving it a border
| zsloan |
| 2016-04-20 | Add file | Pjotr Prins |
| 2016-04-20 | -a...[PATCH 039/100] Removing commented code
| Pjotr Prins |
| 2016-04-20 | -a...[PATCH 038/100] Fix compile errors
| Pjotr Prins |
| 2016-04-20 | [PATCH 037/100] WebQtlConfig: sanitizing naming and used vars | Pjotr Prins |
| 2016-04-20 | [PATCH 033/100] Refactored file searching | Pjotr Prins |
| 2016-04-20 | [PATCH 032/100] file locating: error checking is built-in | Pjotr Prins |
| 2016-04-20 | [PATCH 024/100] Sanitizing file handling | Pjotr Prins |
| 2016-04-20 | [PATCH 023/100] WIP fixing all paths | Pjotr Prins |
| 2016-04-19 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development...Conflicts:
wqflask/base/trait.py
| zsloan |
| 2016-04-13 | Moved the code getting the description/location because it was throwing an er... | zsloan |
| 2016-04-13 | Global search should be able to return description and location columns now | zsloan |
| 2016-04-11 | Figured out how to load results into dataTable using AJAX, but still need to ......Added code getting the description, etc to trait.py since it was missed from last commit
| zsloan |
| 2016-04-11 | Changed the way trait data is retrieved for the global search page (it now ge......This change increases the speed by a bit (85 seconds to 66 seconds for example)
Made the column width for location a bit wider for global search page so it doesn't spill onto a second line
| zsloan |
| 2016-03-29 | Forgot to add GeneralObject file needed for haplotype analyst in last commit | zsloan |
| 2016-03-18 | Replaced header with other information in qtl map...Began adding menu to qtl map
Fixed global search to not retrieve samples (to increase speed)
Got the vector plot working again so it can be displayed alongside the gn1-style plot
Only display the vector plot when doing GEMMA to speed up (this might not be necessary)
| zsloan |
| 2016-03-15 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan |
| 2016-03-15 | Fixed the mapping figure track that lets you zoom into a smaller range...Fixed the third party mapping figure tracks to refer to the correct chromosome (before it was always 1)
| zsloan |
| 2016-03-14 | Changed the way headers look across all pages...Changed the way details are displayed in show trait page
Changed search query so that it orders results by symbol
| zsloan |
| 2016-03-03 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan |
| 2016-03-02 | Increased gsearch speed by removing unnecessary query for sample data...Still slower than preferable due to having to query the gn1 database for every trait in the search results
| zsloan |
| 2016-02-25 | fixed untracked files | zsloan |
| 2016-02-04 | Most importantly, this commit fixes an issue that caused the trait page to no......An Intro section is also added to the header, though for the time being its contents aren't populated and the edit option isn't working
| zsloan |
| 2015-12-14 | GN1 mapping full genome figure now correct for pylmm and output to web page | zsloan |
| 2015-12-12 | Changed loop drawing qtl curve to fix some issues; still need to make it draw... | zsloan |
| 2015-11-18 | Fixed issue where literature and tissue correlation didn't work...Scatterplot matrix feature only appears if user is logged in now
Committing current progress on mapping page (it can at least import the file now, but there are still errors)
| zsloan |
| 2015-11-09 | Fixed issue that caused mapping to not work; for some reason the path to pylm... | zsloan |
| 2015-10-12 | Changed the location filter for correlation page | zsloan |
| 2015-09-11 | Comment out some excessive stdout spam | DannyArends |
| 2015-09-10 | Fixed "TypeError: float argument required, not NoneType" about mean....Committer: Lei Yan <lei@penguin.uthsc.edu>
On branch master
| Lei Yan |
| 2015-08-26 | Fixed issue with colums for the gene global search (still need to change for ......Fixed issue where LRS and LOD are sometimes labeled incorrectly
Changed the header of the trait page
Added link to GN1 in header
Fixxed an issue that made permutations not work with pylmm
Fixed "sign in" button when creating a collection while not logged in
| zsloan |
| 2015-07-20 | Fixed the code that generates the dataset selection drop-down for correlations...Made changes to the tables of correlation results, collections, and search results:
- Added resizeable columns to correlation results and collections, but not to search results
because it seems that it requires Y scrolling to be set (I'll check if it makes sense to add scrolling
to the search results)
- Correlation results and collections are now in scrolling tables
- The style is the same across all of these tables now
Remaining issues:
- It doesn't seem like I can set the column width when initializing dataTables in
correlation results. I don't know why this is; it might be due to the table already being the size
of a full page. I want to be able to default to some good widths, even if the user can resize them
- I tried adding hoverForMore, but it doesn't seem to cooperate with datatable cells; I think this is
due to having to put the text in a div.
| zsloan |
| 2015-07-10 | Fixed the genofile_parser.py script since some .geno files had been incorrect......Fixed GO search to work with combined searches
| zsloan |
| 2015-07-09 | Mapping methods now check for existing genotype files....Currently we still usually get our samplelists from the genofile. This is
dumb because it results in us having a bunch of "dummy" genofiles for certain
data sets (seems to be mostly human ones). This means that checking for the
genofile alone isn't enough to determine if a mapping method should exist
for a given group
I wrote some code that will instead get the samplelist from the plink .fam file
for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy
.geno files, but we can't yet do so because it's currently the only place we seem to be storing
the sample list for some groups.
I also moved gemma into the plink directory to get it out of the git tree.
Since it uses the same files as plink, it doesn't make sense for it
to be in its own separate directory
| zsloan |
| 2015-07-09 | Some phenotype searches were throwing an error due to an assert statement in ... | zsloan |
| 2015-07-07 | Added index column and changed the way location is displayed for search results | zsloan |
| 2015-06-29 | Merge pull request #72 from lomereiter/issue69...Fixes #69 | zsloan |
| 2015-06-22 | fixed a few potential security issues | Artem Tarasov |
