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genenetwork2
acenteno
authentication_test
blatseq_fix
chores/code-refactoring
chores/lmdb-integration
chores/replace-cdns
chores/script-textfile-generator
correlations-return-fewer-results
debug-too-many-connections-error
decouple_tools_and_wqflask_app
development
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feature/search-history
feature/textfile-generator
gn-master
guix-shell
hook-up-auth-to-traits-page
itp_covariate_testing
jupyter_notebooks_ui
lmdb-code/refactoring
master
notebooks_api
oauth2-migrate-user-details-and-data
partial-correlations
partial_corr_ui_rework
pcorrs_targets
penguin2
phewas
production
proxy-integration
refactor-configurations
refactor-data_set_py-20220920
revert-366-360_update_htmlgen
rework-genotype-linking
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GeneNetwork (2nd generation)
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2019-10-04
Fixed issue where there was an error if the REST API used for aliases was down
zsloan
2019-08-22
Changed header drop-down menu layout
zsloan
2019-08-01
Updated aliases to get all species aliases and remove duplicates
zsloan
2019-08-01
Added wikidata aliases
zsloan
2019-08-01
Made some more aesthetic changes to various pages and charts/figures
zsloan
2019-07-23
Added change to automatically update datasets list using rest api instead of ...
zsloan
2019-07-18
Made change that should fix encoding issue, fingers crossed
zsloan
2019-07-03
Fixed bug for creating one of the third party links on the trait page
zsloan
2019-06-24
Got non-LOCO GEMMA mapping working with gemma-wrapper (so caching should work...
zsloan
2019-06-18
Fixed issue with sorting involving 0's on trait page
zsloan
2019-06-05
Fixed issue that caused interval mapping to not work because the python imple...
zsloan
2019-06-04
Added GeneMANIA link
zsloan
2019-05-24
Replaced qtlreaper Dataset object with python object
zsloan
2019-05-14
Added all of the third party links from GN1
zsloan
2019-05-06
Removed some unused imports of htmlgen
zsloan
2019-03-18
- Added PCA traits to correlation matrix. You can't change their names yet or...
zsloan
2019-03-07
Changed the way covariates are displayed when selected for mapping
zsloan
2019-02-22
Fixed some appearance issues with several tables
zsloan
2019-02-15
Fixed error caused by change to N values in database (now takes strings inste...
zsloan
2019-02-13
Removed pylmm references and related functions
Pjotr Prins
2019-02-12
Added GeneWeaver linkout
zsloan
2019-02-05
Fixed issue with getting marker info that affected heatmap and possibly other...
zsloan
2019-01-11
Got InDel working for Variant Browser
zsloan
2018-12-21
Fixed collections so they can be very large (1000+ traits)
zsloan
2018-10-24
- SNP Browser is mostly complete; just need to test more and add SNP density ...
zsloan
2018-10-11
- Added fix for GEMMA LOCO
zsloan
2018-10-01
- Can now remove cofactors from correlation scatterplot and select them by ju...
zsloan
2018-08-14
Added cofactors to correlation scatterplot and changed it to use Plotly
zsloan
2018-05-17
Added script to quantile normalize a data set and enter its normalized sample...
zsloan
2018-04-19
Changed width of top bar and a couple other html objects to 100% instead of s...
zsloan
2018-04-16
Resolved conflicts after pulling changes
zsloan
2018-04-11
Added tissue correlation p value to correlation page results, since it was mi...
zsloan
2018-04-09
Removed svg.py, which I know isn't used, and webqtlFormData, which I'm pretty...
zsloan
2018-04-09
Removed unused code from webqtlFormData.py
zsloan
2018-04-09
Removed some unused code in webqtlConfig; some might need to be added back in...
zsloan
2018-04-06
Mapping figure output now gives more accurate information
zsloan
2018-03-22
Fix 'def' statement
Muriithi Frederick Muriuki
2018-02-10
Check for bimbam path and bail out if it is missing
Pjotr Prins
2017-12-20
Bring in some earlier work - mostly documentation and startup handling
Pjotr Prins
2017-11-06
Replaced Histogram and Bar Chart with Plotly version and added new Box Plot w...
zsloan
2017-08-29
Mostly changes related to getting gemma working with covariates and BIMBAM fi...
zsloan
2017-06-12
Fixed issue where 0.0 values would be converted into X's on the trait page
zsloan
2017-06-09
- Changed the way the genofile is set so different genofiles can be selected ...
zsloan
2017-05-31
Added various tool options to correlation results page and improved table app...
zsloan
2017-05-21
Merge from the diet branch.
Pjotr Prins
2017-04-17
Added option to remove collections from collection list page
zsloan
2017-04-05
- Temporary traits can be created, viewed, and added to collections
zsloan
2017-02-09
Fixed issue where I forgot to add GeneticType to the query_for_group query fo...
zsloan
2017-02-09
Added genetic_type to DatasetGroup object to differentiate between which grou...
zsloan
2017-02-06
Merge branch 'master' of github.com:zsloan/genenetwork2
zsloan
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