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2020-07-24Remove unreachable conditional...* wqflask/base/GeneralObject.py(__getattr__): remove if statement that is unreachable BonfaceKilz
2020-07-24Inject redis instance into DatasetType class...* wqflask/base/data_set.py(DatasetType): - Rename Redis instance to r to avoid confusion and name collisions - Inject the redis instance into Dataset_Types class to make it easier to test - Rename Dataset_Types class to DatasetType class BonfaceKilz
2020-07-24Apply autopep-8...* wqflask/base/data_set.py: Apply autopep-8 BonfaceKilz
2020-07-24Apply autopep-8...* wqflask/base/GeneralObject.py: Replace tabs with 4 spaces BonfaceKilz
2020-07-24Remove unused importBonfaceKilz
2020-07-24Added binary casting to phenotype trait info query to fix unicode issuezsloan
2020-07-08Removed remaining unused references to the old qtlreaperzsloan
2020-07-06Temporarily commented out the line in trait.py doing the encoding until we fi...zsloan
2020-07-06Fixed some of the logic with how traits are authenticated to avoid situation ...zsloan
2020-06-29Change that hopefully fixes some encoding stuffzsloan
2020-06-24Temporary partial fix to issue of resources without info; need to add somethi...zsloan
2020-06-22Fixed issue with temp traits not working for trait page functions like correl...zsloan
2020-06-20Fixed ports for proxy (though I need to add the port to global variables) and...zsloan
2020-06-20Added some admin functionality and fixed issue with temp traitszsloan
2020-06-17Adding all the authentication stuffzsloan
2020-06-05Commiting other current group/resource management code, plus the new fileszsloan
2020-06-04Added back in trait info queries for situations where the proxy isn't runningzsloan
2020-06-04Really should have split this into many more commits:...- Now use proxy to pull trait data and hide traits/results that the user doesn't have view permission for - Created a factory method for creating trait ob so it can return None when user doesn't have view permissions (this is why such a large number of files are changed) - Added metadata to permutation export - Added current group management code - Added fixed password verification e-mail code zsloan
2020-05-28Added lines calling proxy for publish datasets + added some resource redis qu...zsloan
2020-05-21Made search result table width variable again and fixed row highlighting, tho...zsloan
2020-05-07Fixed blatseq issue and geno correlation issueblatseq_fixzsloan
2020-05-07Committing current progress on group manager + a minor fix in dataset.pyzsloan
2020-04-27Added timeout for when/if it does the REST API query, so it doesn't hang inde...zsloan
2020-04-27Made change that should allow dataset structure to be loaded from Redis inste...zsloan
2020-04-26Removed the code that was still writing the database menu JSONzsloan
2020-04-24Replaced hard-coded instances of GN2 urls with ones pulled from settings filezsloan
2020-04-24Made a fix that should prevent the issue where new datasets cause an error wh...zsloan
2020-04-06Added Mean column for phenotype traits in search and global search result tableszsloan
2020-03-27Fixed issue where GEMMA wasn't showing up for certain groupszsloan
2020-03-27Added integration for using RData files with R/qtl, plus some other changes t...zsloan
2020-03-09I think this should complete consolidating all the collections code.zsloan
2020-03-03Forgot to replace code referring to hmac function user_managerzsloan
2020-02-07Users can now add and do mapping on genotype files that only include a subset......Also filtered the results used by Christian's genome browser, so now it should have an easier time loading when dealing with larger numbers of markers zsloan
2020-02-06Fixed encoding issuezsloan
2020-01-22Fixed issue that caused submitting temp traits to not workzsloan
2020-01-08Made change that I think should fix the unicode stuff once and for allzsloan
2019-12-17Added RGD link to trait page and removed Genotation link since it isn't workingzsloan
2019-12-04Added M to the possible non-number 'chromosome' nameszsloan
2019-12-04Fixed error that sometimes occurs if there's no mean expression and changed i...zsloan
2019-11-21Use updated phenotype display IDs for all phenotypes with codes now, not just...zsloan
2019-11-21Added 3-letter codes to unpublished phenotype traits and fixed issue with ord...zsloan
2019-11-14Changed code to rebuild dataset list each time you view the trait page to avo......Fixed logic for UniProt link to use UniProtId instead of protein ID zsloan
2019-11-05Fixed issue with ordering items in correlation dataset select dropdownzsloan
2019-10-24Changed logic for generating drop-downs such that it shows the correct Phenot...zsloan
2019-10-18Added UniProt link and fixed issue that caused sample lists to not be formed ...zsloan
2019-10-04Fixed issue where there was an error if the REST API used for aliases was down...Added option to download as JPEG in addition to SVG for basic stats figures zsloan
2019-08-22Changed header drop-down menu layout...Added a couple new third party links Added link to GN1 trait page in trait pages Fixed gene global search table appearance zsloan
2019-08-01Updated aliases to get all species aliases and remove duplicateszsloan
2019-08-01Added wikidata aliases...Fixed year to not be a hyperlink when no pubmed id Fixed first column width so it doesn't go onto two lines for trait details zsloan
2019-08-01Made some more aesthetic changes to various pages and charts/figures...Added some information to the mapping loading page zsloan
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