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genenetwork2
acenteno
authentication_test
blatseq_fix
chores/code-refactoring
chores/lmdb-integration
chores/replace-cdns
chores/script-textfile-generator
correlations-return-fewer-results
debug-too-many-connections-error
decouple_tools_and_wqflask_app
development
epysode
feature/search-history
feature/textfile-generator
gn-master
guix-shell
hook-up-auth-to-traits-page
itp_covariate_testing
jupyter_notebooks_ui
lmdb-code/refactoring
master
notebooks_api
oauth2-migrate-user-details-and-data
partial-correlations
partial_corr_ui_rework
pcorrs_targets
penguin2
phewas
production
proxy-integration
refactor-configurations
refactor-data_set_py-20220920
revert-366-360_update_htmlgen
rework-genotype-linking
run-corrs-in-external-process
stable
testing
GeneNetwork (2nd generation)
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Author
2014-11-17
Just more changes converting to bootstrap 3
Zachary Sloan
2014-10-17
Added reference, policies, and links pages
Zachary Sloan
2014-10-02
Fixed an error when there's no locus for mRNA expression traits
Zachary Sloan
2014-08-21
Committer: Lei Yan <lei@penguin.uthsc.edu>
Lei Yan
2014-08-21
Added the option to display mapping results as either an interval mapping
Zachary Sloan
2014-07-21
Fixed issue where sample values were ordered on the trait page
Zachary Sloan
2014-07-18
Merge /home/zas1024/gene
Lei Yan
2014-07-18
Added outlier highlighting
Zachary Sloan
2014-07-18
Correlation table for phenotypes is working
Lei Yan
2014-07-09
Updated coffeescript, svg export working fine, interval mapping zoom working
Zachary Sloan
2014-06-25
Added Karl's correlation matrix code
Zachary Sloan
2014-06-06
Implimented Karl Broman's lodchart code for the interval mapping function.
Zachary Sloan
2014-05-05
Committing a bunch of changes related to integrating GEMMA and
Zachary Sloan
2014-02-28
Committing after creating AnonCollection class and before adding
Zachary Sloan
2014-02-28
Made some changes/comments to Lei's load_genotypes.py file
Zachary Sloan
2014-02-27
Began working on a TraitCollection.py file that will contain both the
Zachary Sloan
2014-01-30
Most of the work is done towards running lmm.py from the command line
Zachary Sloan
2014-01-29
Limited number of markers in marker regression result table to
Zachary Sloan
2014-01-23
Histogram is working
Zachary Sloan
2014-01-03
Wrote some code for the histogram figure
Zachary Sloan
2013-11-27
Clicking a trait in "color by trait" now gets all of its sample values
Zachary Sloan
2013-11-26
Made some progress towards getting the traits inside a collection to display ...
Zachary Sloan
2013-11-25
Got the interval mapping results into a table
Zachary Sloan
2013-11-01
Merge /home/sam/gene
Zachary Sloan
2013-10-30
More work on collections
Sam
2013-10-25
Began working on color coding bar chart by extra attributes
Zachary Sloan
2013-10-15
Changed templates to call the header macro
Zachary Sloan
2013-10-11
Merge /home/lei/gene
Zachary Sloan
2013-10-10
Almost have correlation working for non-primary strain/group
Lei Yan
2013-10-09
Improved some of the code related to the correlation page
Lei Yan
2013-10-08
Literature correlation works when it is selected as the sorted
Lei Yan
2013-10-08
Did some work with interval mapping page; will use qtl reaper to do
Zachary Sloan
2013-09-27
Added trait links to correlation results
Lei Yan
2013-09-24
Did some work towards doing the tissue correlation for all traits
root
2013-09-24
Fixed the db_tools import in mrna_assay_tissue_data.py
Zachary Sloan
2013-09-20
Tissue correlation results work for sample r/rho correlation page
Lei Yan
2013-09-13
Merge https://github.com/zsloan/genenetwork
Lei Yan
2013-08-21
Just removed a couple print statements
Zachary Sloan
2013-08-15
Removed the markers with no variance (and thus no p-values) from the
Zachary Sloan
2013-08-13
Added several test files and the file with the class that
Zachary Sloan
2013-08-07
Fixed things with the dataset dropdowns and mRNA datasets
Zachary Sloan
2013-08-02
Fixed a bug related to groups with genofiles (not sure if it makes sense
Zachary Sloan
2013-07-30
Just added some print statements to debug an issue with LMM code
Zachary Sloan
2013-07-23
Fixed a couple issues with he quick_search_table.py script
Zachary Sloan
2013-07-19
Finished integrating code that reads sample list from geno files
Zachary Sloan
2013-07-19
Created file gen_group_samplelists that iterates through all genofiles
Zachary Sloan
2013-07-18
Added Amelie's rat data genotypes
Zachary Sloan
2013-07-18
Merge branch 'master' of https://github.com/zsloan/genenetwork
Zachary Sloan
2013-07-18
Added to installation notes
Zachary Sloan
2013-07-17
Fixed gen_select_dataset.py
Zachary Sloan
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