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AgeCommit message (Expand)Author
2022-10-04Add more information to exception to help in debuggingFrederick Muriuki Muriithi
2022-09-26Remove unused database_connection import from species.pyzsloan
2022-09-25Fix issue where the display name was used in the hmac for phenotype traitszsloan
2022-09-22Provide database cursor as argument for TheSpecies and ChromosomesFrederick Muriuki Muriithi
2022-09-21Added Markers/HumanMarkers import to datasetgroup.py and removed it fromzsloan
2022-09-21Refactor: pass redis and db connections as argumentFrederick Muriuki Muriithi
2022-09-20Remove global `Dataset_Getter` variableFrederick Muriuki Muriithi
2022-09-20Revert "Use member variable `self.conn` to avoid test failure"Frederick Muriuki Muriithi
2022-09-20Use member variable `self.conn` to avoid test failureFrederick Muriuki Muriithi
2022-09-20Decompose file into separate modulesrefactor-data_set_py-20220920Frederick Muriuki Muriithi
2022-09-12Fix query: Add comma to separate columns.Frederick Muriuki Muriithi
2022-09-12Fix query: remove wrongly-placed commaFrederick Muriuki Muriithi
2022-09-12Check db resultset before indexing into itFrederick Muriuki Muriithi
2022-09-09Fix bug in retrieve_other_nameszsloan
2022-09-09tissue:fetch for query formattingAlexander_Kabui
2022-09-09Retain only a single import of the same moduleFrederick Muriuki Muriithi
2022-09-09Merge pull request #732 from BonfaceKilz/bug/fix-broken-correlationsMuriithi Frederick Muriuki
2022-09-09Fetch sample values correctlyMunyoki Kilyungi
2022-09-09Add missing importMunyoki Kilyungi
2022-09-09Import missing module.Frederick Muriuki Muriithi
2022-09-09Filter out Samples without valuesFrederick Muriuki Muriithi
2022-09-09Use `database_connection()`Frederick Muriuki Muriithi
2022-09-09Replace `g.db.execute` with `cursor.execute`Frederick Muriuki Muriithi
2022-09-08Simplify how chromosomes are fetchedMunyoki Kilyungi
2022-09-08Remove redundant cursor.fetchone()Munyoki Kilyungi
2022-09-08Use "%s" in sql queryMunyoki Kilyungi
2022-09-08Inject database connection to mrna_assay_tissue_data classMunyoki Kilyungi
2022-09-08Fix sql queriesMunyoki Kilyungi
2022-09-08Add missing "," in cursor.execute()Munyoki Kilyungi
2022-09-08Remove intermediate variables that are only used onceMunyoki Kilyungi
2022-09-08Delete dead importsMunyoki Kilyungi
2022-09-08Replace g.db with database_connection() context managerMunyoki Kilyungi
2022-09-08Delete logger importMunyoki Kilyungi
2022-09-08Replace assertion with Value Error for non-existent datasetMunyoki Kilyungi
2022-09-08Replace g.db with database_connection() context managerMunyoki Kilyungi
2022-09-08Merge pull request #727 from Alexanderlacuna/feature/use-textfilesAlexander Kabui
2022-09-07catch general errors this will recreate the fileAlexander_Kabui
2022-09-06Fix error with dataset menu query in data_set.pyzsloan
2022-09-06Merge branch 'testing' into feature/generalize_tableszsloan
2022-09-06Set up the self.* variables from query resultsFrederick Muriuki Muriithi
2022-09-06Use dataset name if dataset group name is not set.Frederick Muriuki Muriithi
2022-08-31Delete unused modulesMunyoki Kilyungi
2022-08-31Replace fetchall, fetchone, fetch1 with database_connectionMunyoki Kilyungi
2022-08-31Remove "with Bench ..." callsMunyoki Kilyungi
2022-08-31Remove usage of "logger" and un-necessary comments wrt the sameMunyoki Kilyungi
2022-08-31add new environment variable:TEXTDIRAlexander_Kabui
2022-07-12Include genotypes for F1s/reference/non-reference strains when fetchingzsloan
2022-06-23Change jsonable in GeneralTrait so that it passes all necessary tablezsloan
2022-06-23Convert trait.view to string for conversion to JSONzsloan
2022-06-13Check for chromosome of 'Un' and print location as 'Not available' in such caseszsloan