Age | Commit message (Expand) | Author |
---|---|---|
2020-09-17 | Convert "target_string" to a str type...* wqflask/base/trait.py (retrieve_trait_info): Convert "target_string" to a str, otherwise an exception will be thrown if it's None. | BonfaceKilz |
2020-09-17 | Apply pep8...* wqflask/base/trait.py: Apply pep8. * wqflask/utility/authentication_tools.py: Ditto. | BonfaceKilz |
2020-08-28 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
2020-08-27 | Remove python2 string processing to utf-8...* wqflask/base/trait.py: Remove python2 codecs.BOM_UTF8 methods. * wqflask/wqflask/search_results.py: Remove utf-8 decode method on string. | BonfaceKilz |
2020-08-27 | Replace mysqldb's "escape" with the one from utils.db_tools...Mysqldb's escape returns a binary string. Use utils.db_tools which adds an extra step of converting the binary string to a string. | BonfaceKilz |
2020-08-27 | Remove redundant methods which are defined elsewhere...* wqflask/base/data_set.py: Delete "create_in_clause", and "mescape" which are defined in "utility.db_tools" | BonfaceKilz |
2020-08-27 | Remove unused imports | BonfaceKilz |
2020-08-27 | Replace "string.split" & "string.join" with python's inbuilt methods | BonfaceKilz |
2020-08-26 | Remove "from __future__ import new_feature" statements...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-future> | BonfaceKilz |
2020-08-26 | Replace "__cmp__" with "__eq__" magic method...* wqflask/base/GeneralObject.py: "__cmp__" is no longer used in python3. See: <https://stackoverflow.com/questions/8276983/why-cant-i-use-the-method-cmp-in-python-3-as-for-python-2> | BonfaceKilz |
2020-08-26 | Rename "unicode" to "str"...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-unicode> | BonfaceKilz |
2020-08-25 | Fixed issue in DatasetType that caused an error when trying to load new...datasets * wqflask/base/data_set.py - Added fetchone() to g.db.execute() which is what was causing the error | zsloan |
2020-08-20 | Handle module renames in the standard library...Run: ``` 2to3-3.8 -f imports -w . && \ 2to3-3.8 -f imports2 -w . ``` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-imports> and <https://docs.python.org/2/library/2to3.html#2to3fixer-imports2> | BonfaceKilz |
2020-08-20 | Disable python2 QTLReaper...* wqflask/base/data_set.py: Remove usage of "reaper" to load datasets | BonfaceKilz |
2020-08-20 | Add backward support for urllib...* wqflask/base/trait.py: Remove unused imports * wqflask/db/call.py (Bench): Add urllib2 fallback for python2 | BonfaceKilz |
2020-08-19 | Remove extra whitespace(or add it) from comma separated items...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib> | BonfaceKilz |
2020-08-19 | Make Python more idiomatic...Run `2to3-3.8 -f idioms -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-idioms> | BonfaceKilz |
2020-08-19 | Handle the rename of urllib and urllib2 to the urllib package...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib> | BonfaceKilz |
2020-08-19 | Replace backtick repr with the repr() function...* wqflask/base/trait.py: See <https://docs.python.org/2/library/2to3.html#2to3fixer-repr> | BonfaceKilz |
2020-08-19 | Wrap `raise` statements in parenthesis...Run `2to3-3.8 -f raise -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-raise> | BonfaceKilz |
2020-08-19 | Replace `izip` with python's built-in equivalent...Run `2to3-3.8 -f itertools -w . && 2to3-3.8 -f itertools_imports -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-itertools_imports> and <https://docs.python.org/2/library/2to3.html#2to3fixer-itertools> | BonfaceKilz |
2020-08-19 | Fix dictionary iteration methods...Run `2to3-3.8 -f dict -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-dict> and <https://stackoverflow.com/questions/17695456/why-does-python-3-need-dict-items-to-be-wrapped-with-list> | BonfaceKilz |
2020-07-27 | Clean up webqtlCaseData class...* wqflask/base/webqtlCaseData.py (webqtlCaseData): - Remove obsolete 'Object' from Class inheritance - Replace 'str' with 'case_data_string' variable- it collides with python in-builts - Use pythonic 'is Not None' form - Remove redundancy in 'if' forms - Update copyright header | BonfaceKilz |
2020-07-27 | Abstract away redundant code into set_dataset_key method...* wqflask/base/data_set.py (Dataset): - Add set_dataset_key - Remove __call__ method | BonfaceKilz |
2020-07-27 | Use the correct redis instance inside object...* wqflask/base/data_set.py (DatasetType): Use object's redis instance | BonfaceKilz |
2020-07-25 | Removing bimbam check. We'll get rid of bimbam anyway. | Pjotr Prins |
2020-07-24 | Merge pull request #409 from BonfaceKilz/Build/add-tests...Build/add tests | zsloan |
2020-07-24 | Fixed queries that were wrongly returning Data IDs as Ns | zsloan |
2020-07-24 | Remove unreachable conditional...* wqflask/base/GeneralObject.py(__getattr__): remove if statement that is unreachable | BonfaceKilz |
2020-07-24 | Inject redis instance into DatasetType class...* wqflask/base/data_set.py(DatasetType): - Rename Redis instance to r to avoid confusion and name collisions - Inject the redis instance into Dataset_Types class to make it easier to test - Rename Dataset_Types class to DatasetType class | BonfaceKilz |
2020-07-24 | Apply autopep-8...* wqflask/base/data_set.py: Apply autopep-8 | BonfaceKilz |
2020-07-24 | Apply autopep-8...* wqflask/base/GeneralObject.py: Replace tabs with 4 spaces | BonfaceKilz |
2020-07-24 | Remove unused import | BonfaceKilz |
2020-07-24 | Added binary casting to phenotype trait info query to fix unicode issue | zsloan |
2020-07-21 | Fixed issue that caused group codes to be wrong sometimes | zsloan |
2020-07-14 | Added binary casting to phenotype trait info query to fix unicode issue | zsloan |
2020-07-08 | Removed remaining unused references to the old qtlreaper | zsloan |
2020-07-06 | Temporarily commented out the line in trait.py doing the encoding until we fi... | zsloan |
2020-07-06 | Fixed some of the logic with how traits are authenticated to avoid situation ... | zsloan |
2020-06-29 | Change that hopefully fixes some encoding stuff | zsloan |
2020-06-24 | Temporary partial fix to issue of resources without info; need to add somethi... | zsloan |
2020-06-22 | Fixed issue with temp traits not working for trait page functions like correl... | zsloan |
2020-06-20 | Fixed ports for proxy (though I need to add the port to global variables) and... | zsloan |
2020-06-20 | Added some admin functionality and fixed issue with temp traits | zsloan |
2020-06-17 | Adding all the authentication stuff | zsloan |
2020-06-05 | Commiting other current group/resource management code, plus the new files | zsloan |
2020-06-04 | Added back in trait info queries for situations where the proxy isn't running | zsloan |
2020-06-04 | Really should have split this into many more commits:...- Now use proxy to pull trait data and hide traits/results that the user doesn't have view permission for - Created a factory method for creating trait ob so it can return None when user doesn't have view permissions (this is why such a large number of files are changed) - Added metadata to permutation export - Added current group management code - Added fixed password verification e-mail code | zsloan |
2020-05-28 | Added lines calling proxy for publish datasets + added some resource redis qu... | zsloan |
2020-05-21 | Made search result table width variable again and fixed row highlighting, tho... | zsloan |