| Age | Commit message (Expand) | Author |
|---|
| 2017-01-26 | Merge pull request #1 from genenetwork/testing...Various changes/fixes | zsloan |
| 2017-01-26 | GEMMA now works with CFW data (had to update where it looks for the input fil......Y-axis for GEMMA now says -log(p)
Updated the style of the trait sample data table in the trait page
Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs)
Updated dataset menu json file
Added option to show and hide columns to regular search page using colVis
Changed regular and global search result table styles/column widths
Began work on user trait submission code (not working yet though)
Began work on static loading page for mapping results
| zsloan |
| 2016-12-15 | Merge pull request #234 from zsloan/master...Various changes | zsloan |
| 2016-12-13 | Fixed a problem related to the last commit that caused a problem when loading... | zsloan |
| 2016-12-12 | Moved a bunch of functions out of the GeneralTrait class that didn't need to ......Improved loadings plot on the correlation matrix page to look like GN1's figure (though it's vector and GN1's was static)
Removed some unused code from show_trait.py
changed appearance of table headers some, though needs a little more work
Updated dataset_menu_structure.json
| zsloan |
| 2016-11-18 | Fix sql error: (GeneNetwork error: (_mysql_exceptions.OperationalError) (1054... | Lei Yan |
| 2016-11-15 | Fixed issue where sample values of 0 would sometimes be displayed as 'x', whi......Fixed issue where the mean would sometimes be displayed into of the additive effect
| zsloan |
| 2016-11-11 | Fixed problem that caused checkboxes to not work with Scroller search results......Improved the way the table width is set for search results page
| zsloan |
| 2016-11-02 | Added toggleable short and long labels to correlation matrix...Fixed issue where I forgot to remove a parameter from jsonable_table_row in trait.py
| zsloan |
| 2016-11-02 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into development | zsloan |
| 2016-11-02 | Added Scroller functionality to regular (but not global) search, which increa......In order to implement Scroller (and make table look nicer), all rows are the same height and excess description/authors text is shown in a tooltip
Increased table width for non-Geno DBs
Fixed issue where Genotype traits did not fetch their location_repr (text for displaying location), causing that column to be blank in searches
Fixed issue causing Correlation Matrix cells to not be colored corresponding with their correlation and also increased cell font a little
Fixed issue where dataset link in the Correlation Page did not correctly point to corresponding GN1 page
| zsloan |
| 2016-10-31 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | Pjotr Prins |
| 2016-10-31 | Merge branch 'master' of github.com:lyan6/genenetwork2 into lyan | Pjotr Prins |
| 2016-10-29 | For those case that we have multiple genotypes we would like to add a selector. | Lei Yan |
| 2016-10-25 | Just removed some extraneous spaces in trait.py | zsloan |
| 2016-10-25 | Replaced the Download Table button for collection page with python version th......Removed currently unused javascript and css imports related to the DataTables buttons import (since it was replaced with the python export) from regular search, both global searches, and the view_collection page
Added a bunch of parameters to the jsonable function for the GeneralTrait object in order to later create a json version of the search results and implement the client-side Scroller feature (which dynamically loads table rows from json when you scroll)
| zsloan |
| 2016-10-07 | Saner handling of TMPDIR and TEMPDIR...Throw error when TMPDIRs are not writable
| Pjotr Prins |
| 2016-10-06 | Logger: add more granular debug messages | Pjotr Prins |
| 2016-10-05 | Show datasets only on debug | Pjotr Prins |
| 2016-10-03 | Debug: sanitize some output | Pjotr Prins |
| 2016-09-29 | Fix global search "il6" for "Internal Server Error". Add single quotes into M... | Lei Yan |
| 2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins |
| 2016-09-13 | Run scripts from ./wqflask - just like the webserver | Pjotr Prins |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver set......Run with
./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
| Pjotr Prins |
| 2016-09-02 | Added Network Graph feature that uses cytoscape.js. Currently you can view GN......Fixed issue that caused error with correlation page
| zsloan |
| 2016-08-24 | Replaced post-publication description with pre-publication description for co......Fixed table style for mapping results and interval analyst tables and added additive/dominance effect columns to the former
Fixed mapping figure X-axis to accurately label Centimorgans vs Megabases (previously it would always say Megabases)
Removed the "Sequence Site" marker from mapping result figure when mapping with genetics (centimorgans) scale
Removed some unused javascript libary imports from search/global search pages
| zsloan |
| 2016-08-16 | Users can now select specific traits from collection when using collection to......To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url
Duplicate traits can no longer by added to collections
Fixed the digits for a few table columns in collection (additive effect, etc).
| zsloan |
| 2016-08-05 | Fixed issue that caused some interval mapping results to be wrong; the cause ......Added a message to the Add to Collection page warning users that anonymous collections will only be stored for 5 days
Updated genofiles
| zsloan |
| 2016-07-27 | Problem with phenotype traits should be fixed now | zsloan |
| 2016-06-26 | gn_server: simplify | Pjotr Prins |
| 2016-06-26 | gn_server: simplify | Pjotr Prins |
| 2016-06-26 | gn_server: introduced one new query to fetch a dataset record and force fetch... | Pjotr Prins |
| 2016-06-26 | Resolve conflicts | Pjotr Prins |
| 2016-06-24 | Removed function 'get_info' in trait.py that was never used and reomved 'get_... | zsloan |
| 2016-06-24 | Log: and document SQL calls | Pjotr Prins |
| 2016-06-23 | Logger: SQL | Pjotr Prins |
| 2016-06-23 | Logger: SQL | Pjotr Prins |
| 2016-06-23 | Log: SQL queries | Pjotr Prins |
| 2016-06-23 | Add fetchall iterator | Pjotr Prins |
| 2016-06-23 | Removed dependency on dataset_menu_structure.json | Pjotr Prins |
| 2016-06-23 | Backend: moved methods into call module | Pjotr Prins |
| 2016-06-23 | Refactored dir name dbFunction to db | Pjotr Prins |
| 2016-06-22 | Fixed a couple more errors with the correlation page that occurred when you s... | zsloan |
| 2016-06-21 | No longer runs query to get symbol_values_dict when no id_list to fix occasio... | zsloan |
| 2016-06-18 | Logging settings | Pjotr Prins |
| 2016-06-18 | Logger | Pjotr Prins |
| 2016-06-18 | Logger: replacing print statements | Pjotr Prins |
| 2016-06-18 | Changed file permssions to non-executable | Pjotr Prins |
| 2016-06-17 | Removed trailing spaces in .py and .js files | Pjotr Prins |
| 2016-06-03 | Changed appearance of tables to more easily differentiate them from the rest ......Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A.
| zsloan |
