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2013-01-03Created template for marek regression page and made the compute button directZachary Sloan
to it added asbolute_import in data_set.py and trait.py Made several minor changes and deleted commented out code in trait.py
2012-12-18Created new file species.py and species class object TheSpeciesZachary Sloan
Converted html for the mapping tabs to bootstrap and redid html inside of the Interval Mapping tab Added text input for # of permutation tests and bootstrap tests
2012-12-07Got basic statistics in show_trait to display the correct numberZachary Sloan
of samples for each group Got show_trait page to display for genotype traits
2012-12-06Added minimum/maximum to basic statistics tableZachary Sloan
Continued bug-shooting related to getting show_trait running with phenotype traits
2012-12-06Got show_trait running again for MrnaAssay traitsZachary Sloan
2012-12-06Made many small changes to show_trait/data_set/search_results/trait toZachary Sloan
remove use of the formData object and cursor
2012-12-05Renamed webqtlTrait.py to trait.pyZachary Sloan
Renamed webqtlTrait class to GeneralTrait Began process of removing fd from show_trait.py Created DatasetGroup object in data_set.py (this may end up becoming its own file later if it becomes big enough)
2012-12-05Continued to make changes related to getting rid of cursor/db_connZachary Sloan
and using simple sqlalchemy Got Pheno/MrnaAssay dataset searches working again
2012-12-04Changed parser to allow quotes (i.e. name="rw williams")Zachary Sloan
Renamed webqtlTrait to GeneralTrait and began rewriting parts Changed database code in many places to use simple sqlalchemy
2012-12-04Began changing references to cursor/db_conn to use sqlalchemyZachary Sloan
Wrote function for phenotype author searches
2012-11-30Added example of escaping strings now that trasitioning to simple SQLAlchemyZachary Sloan
2012-11-30Started switching to using basic sqlalchemy to handle db connection/queriesZachary Sloan
Began fixing bugs related to this fix, still in progress
2012-11-29Changed a number of variables (riset to group, db to dataset)Zachary Sloan
Put most of the code for cisLRS and transLRS searches into the class CisTransLrsSearch (might change this name to something else later) Simplified escape code for searches in do_search.py Got search_results working again after some changes
2012-11-28Made some small changes to get code working for genotype searchesZachary Sloan
2012-11-27Created subclass for each main data set type and moved the codeZachary Sloan
for getting trait info that was in search_results.py into its respective class Renamed webqtlDataset to DataSet/create_dataset in webqtlTrait.py, webqtlDatabaseFunction.py, and CorrelationPage.py Got search page running again for mRNA assay data sets with these changes
2012-11-27Renamed webqtlDataSet.py to data_set.pyZachary Sloan
Renamed the class webqtlDataset to DataSet Finished cisLRS and transLRS search types in d_search.py Fixed parent/f1 issue in show_trait.py
2012-10-30Worked on search_result.py code related to adding clause item to queriesZachary Sloan
Continued work on redesigning the trait data page design
2012-10-26Got search page working for mice with a single gene searchZachary Sloan
2012-10-25Worked on search page code; got to the part that actually does the searchZachary Sloan
Renamed RISet and cross to "group" throughout webqtlDataset.py and search_results.py
2012-10-24Now builds json datastructure for menus correctlyZachary Sloan
2012-10-23Finished coffeescript that handles the home page dataset selection dropdownsZachary Sloan
2012-09-28Removed show_trait_page.py and moved relevant code over to ↵Zachary Sloan
DataEditingPage.py (though the user security stuff still needs to be moved over)
2012-09-28Finished getting extra attributes to display correctly in the trait data tableZachary Sloan
2012-09-27Worked on getting attributes in the SampleList object to display data ↵Zachary Sloan
properly, changed SampleList from an object list to object
2012-09-25Got trait data page running for human dataset, changed list of sample ↵Zachary Sloan
objects to a SampleList object
2012-09-25Fixed issue with parent strains appearing twice and began replacing variable ↵Zachary Sloan
names (strain -> sample, for example)
2012-09-19Made pearson/spearman options disappear if lit correlation is chosen, began ↵Zachary Sloan
to address how to deal with Trait object in CorrelationPage
2012-09-14Got the dynamic javascript stats table workingZachary Sloan
2012-09-13Worked on improving readData and informativeStrains functions in ↵Zachary Sloan
webqtlFormData while trying to get correlation page running
2012-09-12Worked towards correctly passing form data to correlation page and addressed ↵Zachary Sloan
various bugs that arose while doing so
2012-09-07Worked with passing form data to correlation pageZachary Sloan
2012-08-29Fixed so that outliers are now correctly highlightedZachary Sloan
2012-08-28Various changes related to the webqtlCaseData object and the way ↵Zachary Sloan
values/variances/num_cases are called in DataEditingPage.py
2012-08-23Various minor changesZachary Sloan
2012-06-06Most of the top fields workingSam Ockman
2012-06-05Ran reindent.py recursively on wqflask directorySam Ockman
2012-06-04Checkpoint along modifying for data trait and analysisSam Ockman
2012-06-03Now using modified webqtlformdata for trait analysisSam Ockman
2012-06-03Before changing fd for trait analysis into a webQTLFormData objectSam Ockman
2012-06-03Cleaning up trait stuff in flaskSam Ockman
2012-05-24Trying to get stuff working under new structureSam Ockman