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2015-05-23new probability plot (using NVD3 library)...* z scores are computed on the client side (using jStat library) * added Shapiro-Wilk test results Artem Tarasov
2015-05-22Fixed issue where correlation didn't work for human traits (and probably some...zsloan
2015-05-21Changed the digits for additive effect and megabases in the search results tablezsloan
2015-05-13combine three similar queries into oneArtem Tarasov
2015-05-13replace multiple tissue queries with a single oneArtem Tarasov
2015-05-13cache datasets for each groupArtem Tarasov
2015-05-12Resolved conflict before commitzsloan
2015-05-12Fix #35...* 'aliases' and 'location' are shown only where relevant * descriptions for phenotype datasets are provided at the top Artem Tarasov
2015-05-11Moved chunksPjotr Prins
2015-05-11Moving pylmm out of the treepjotrp
2015-04-10Added git large file system (the .gitattributes files) and fixed an issue whe...zsloan
2015-03-27Changed HTMLPATH in webqtlConfig since I forgot to in the last commit (since ...zsloan
2015-03-26Removed several unused files from the base folder and their references in oth...zsloan
2015-03-25Pair scan image now loads properlyzsloan
2015-03-24Change back port location and home directory location; this should be in exte...zsloan
2015-03-23Updates to make GN2 work on my version of penguin (ports, and paths)DannyArends
2015-03-17Converting an absolute path to a relative pathDannyArends
2015-01-30Fixed several bugs...Added legend to bar chart color by trait function Added scatterplot matrix figure Fixed database timeout problem Zachary Sloan
2014-12-12Added a additive effect column to search result and collection tables...Fixed the header so that it looks fine when resizing Zachary Sloan
2014-11-17Just more changes converting to bootstrap 3Zachary Sloan
2014-10-17Added reference, policies, and links pages...Improved the appearance of the header menu and "title bar" Zachary Sloan
2014-10-02Fixed an error when there's no locus for mRNA expression traitsZachary Sloan
2014-08-21Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master Lei Yan
2014-08-21Added the option to display mapping results as either an interval mapping...or manhattan plot Fixed a few minor bugs Zachary Sloan
2014-07-21Fixed issue where sample values were ordered on the trait pageZachary Sloan
2014-07-18Merge /home/zas1024/gene...Conflicts: wqflask/base/data_set.py Lei Yan
2014-07-18Added outlier highlighting...Changed order of tabs in statistics panel on trait page Started working on heatmap Zachary Sloan
2014-07-18Correlation table for phenotypes is workingLei Yan
2014-07-09Updated coffeescript, svg export working fine, interval mapping zoom workingZachary Sloan
2014-06-25Added Karl's correlation matrix code...Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait Zachary Sloan
2014-06-06Implimented Karl Broman's lodchart code for the interval mapping function....Suggestive/significant bars and additive effect curve added Zachary Sloan
2014-05-05Committing a bunch of changes related to integrating GEMMA and...adding the correlation matrix page Zachary Sloan
2014-02-28Committing after creating AnonCollection class and before adding...remove trait function Zachary Sloan
2014-02-28Made some changes/comments to Lei's load_genotypes.py fileZachary Sloan
2014-02-27Began working on a TraitCollection.py file that will contain both the...object for logged in user collections and collections created by anonymous users. Zachary Sloan
2014-01-30Most of the work is done towards running lmm.py from the command line...and storing the results in redis Zachary Sloan
2014-01-29Limited number of markers in marker regression result table to...those with a lod score > 2 Did some work towards adding the colored backgrounds to chromosome areas in the manhattan plot Changed the last two chromosomes for human manhattan plots to X and X/Y Started work on writing a script that can independently run the pyLMM code and store the results in redis Zachary Sloan
2014-01-23Histogram is working...Fixed some bug with generating the manhattan plot for the HLC data set Zachary Sloan
2014-01-03Wrote some code for the histogram figure...Changed some code in dataset to try and track down the issue with Amelie's file Zachary Sloan
2013-11-27Clicking a trait in "color by trait" now gets all of its sample values...that will be used to color the bar graph Zachary Sloan
2013-11-26Made some progress towards getting the traits inside a collection to display ...Zachary Sloan
2013-11-25Got the interval mapping results into a tableZachary Sloan
2013-11-01Merge /home/sam/geneZachary Sloan
2013-10-30More work on collectionsSam
2013-10-25Began working on color coding bar chart by extra attributesZachary Sloan
2013-10-15Changed templates to call the header macro...Correlation page now works with Non-BXD (or whatever group) or All Samples options Zachary Sloan
2013-10-11Merge /home/lei/gene...Conflicts: wqflask/maintenance/quick_search_table.py Zachary Sloan
2013-10-10Almost have correlation working for non-primary strain/group...There's just some issue with parents/f1s not being included if you select non-BXD (or whatever the group is). All Samples, however does work. Lei Yan
2013-10-09Improved some of the code related to the correlation page...For example, changed the two functions getting gene symbols and ids for a dataset into one function that can take a column name as a parameter Lei Yan
2013-10-08Literature correlation works when it is selected as the sorted...correlation type (that is, when it is run again all traits in a database) Added a function to data_set.py that gets all the gene_ids in the data set. Not sure if having a separate function for getting the gene_ids and another for getting the gene symbols makes sense. Lei Yan
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