| Age | Commit message (Expand) | Author |
|---|---|---|
| 2016-10-07 | Saner handling of TMPDIR and TEMPDIR...Throw error when TMPDIRs are not writable | Pjotr Prins |
| 2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver set......Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py | Pjotr Prins |
| 2016-06-17 | Removed trailing spaces in .py and .js files | Pjotr Prins |
| 2016-05-31 | Allow the json dir to be in the old location. | Pjotr Prins |
| 2016-05-26 | Issue with certain samples (like BXD65a, ones were there are multiple for a s......Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets | zsloan |
| 2016-05-23 | Reaper mapping results are now correct and account for samples with two names......R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues. | zsloan |
| 2016-05-13 | Removing ref. to HTMLPATH | Pjotr Prins |
| 2016-05-13 | WebqtlConfig.py: Constant handling | Pjotr Prins |
| 2016-05-13 | Fix paths for images | Pjotr Prins |
| 2016-04-20 | Add file | Pjotr Prins |
| 2016-02-25 | fixed untracked files | zsloan |
| 2015-12-14 | GN1 mapping full genome figure now correct for pylmm and output to web page | zsloan |
| 2015-12-12 | Changed loop drawing qtl curve to fix some issues; still need to make it draw... | zsloan |
| 2015-07-09 | Mapping methods now check for existing genotype files....Currently we still usually get our samplelists from the genofile. This is dumb because it results in us having a bunch of "dummy" genofiles for certain data sets (seems to be mostly human ones). This means that checking for the genofile alone isn't enough to determine if a mapping method should exist for a given group I wrote some code that will instead get the samplelist from the plink .fam file for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy .geno files, but we can't yet do so because it's currently the only place we seem to be storing the sample list for some groups. I also moved gemma into the plink directory to get it out of the git tree. Since it uses the same files as plink, it doesn't make sense for it to be in its own separate directory | zsloan |
| 2015-03-27 | Changed HTMLPATH in webqtlConfig since I forgot to in the last commit (since ... | zsloan |
| 2015-03-25 | Pair scan image now loads properly | zsloan |
| 2015-03-24 | Change back port location and home directory location; this should be in exte... | zsloan |
| 2015-03-23 | Updates to make GN2 work on my version of penguin (ports, and paths) | DannyArends |
| 2013-08-07 | Fixed things with the dataset dropdowns and mRNA datasets...Improved the templates for a couple pages related to changing user password, etc | Zachary Sloan |
| 2013-07-19 | Created file gen_group_samplelists that iterates through all genofiles...and builds each groups' samplelist | Zachary Sloan |
| 2013-07-18 | Added Amelie's rat data genotypes...Got human mapping mostly working Fixed dataset dropdown menus | Zachary Sloan |
| 2013-07-18 | Added to installation notes...Removed webqtlConfigLocal file containing passwords Updated main page dropdown menus (dataset_menu_structure.json) | Zachary Sloan |
| 2013-06-13 | Merge /home/sam/gene into flask...Conflicts: wqflask/wqflask/templates/index_page.html Merging the code on Sam's branch onto my own | Zachary Sloan |
| 2013-04-17 | Created file with pickled SNPIterator (from input.py) data...for HLC datasets Still need to read in file | Zachary Sloan |
| 2013-04-02 | pylmm code is running for human data (plink .bed genotype files) | Zachary Sloan |
| 2013-02-07 | Added code to marker_regression.py that creates the numpy arrays to...pass to Nick's code and changed the prep_data.py code to operate on a list of phenotype values instead of a textfile with the values delimited | Zachary Sloan |
| 2013-01-25 | Fixed a few bugs while trying to get the code running on the new server | Zachary Sloan |
| 2012-05-24 | Trying to get stuff working under new structure | Sam Ockman |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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