| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-10-07 | Saner handling of TMPDIR and TEMPDIR | Pjotr Prins | |
| Throw error when TMPDIRs are not writable | |||
| 2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins | |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver ↵ | Pjotr Prins | |
| settings Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py | |||
| 2016-06-17 | Removed trailing spaces in .py and .js files | Pjotr Prins | |
| 2016-05-31 | Allow the json dir to be in the old location. | Pjotr Prins | |
| 2016-05-26 | Issue with certain samples (like BXD65a, ones were there are multiple for a ↵ | zsloan | |
| single BXD or whatever) should be fixed for different mapping methods and data set types Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets | |||
| 2016-05-23 | Reaper mapping results are now correct and account for samples with two ↵ | zsloan | |
| names (like BXD65a) R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues. | |||
| 2016-05-13 | Removing ref. to HTMLPATH | Pjotr Prins | |
| 2016-05-13 | WebqtlConfig.py: Constant handling | Pjotr Prins | |
| 2016-05-13 | Fix paths for images | Pjotr Prins | |
| 2016-04-20 | Add file | Pjotr Prins | |
| 2016-02-25 | fixed untracked files | zsloan | |
| 2015-12-14 | GN1 mapping full genome figure now correct for pylmm and output to web page | zsloan | |
| 2015-12-12 | Changed loop drawing qtl curve to fix some issues; still need to make it ↵ | zsloan | |
| draw to different chr areas though | |||
| 2015-07-09 | Mapping methods now check for existing genotype files. | zsloan | |
| Currently we still usually get our samplelists from the genofile. This is dumb because it results in us having a bunch of "dummy" genofiles for certain data sets (seems to be mostly human ones). This means that checking for the genofile alone isn't enough to determine if a mapping method should exist for a given group I wrote some code that will instead get the samplelist from the plink .fam file for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy .geno files, but we can't yet do so because it's currently the only place we seem to be storing the sample list for some groups. I also moved gemma into the plink directory to get it out of the git tree. Since it uses the same files as plink, it doesn't make sense for it to be in its own separate directory | |||
| 2015-03-27 | Changed HTMLPATH in webqtlConfig since I forgot to in the last commit (since ↵ | zsloan | |
| it used to point to the now-renamed 'web' directory). It obviously also needs to be renamed later, but I'll have to find every place that calls webqtlConfig.HTMLPATH first to do so. | |||
| 2015-03-25 | Pair scan image now loads properly | zsloan | |
| 2015-03-24 | Change back port location and home directory location; this should be in ↵ | zsloan | |
| external settings | |||
| 2015-03-23 | Updates to make GN2 work on my version of penguin (ports, and paths) | DannyArends | |
| 2013-08-07 | Fixed things with the dataset dropdowns and mRNA datasets | Zachary Sloan | |
| Improved the templates for a couple pages related to changing user password, etc | |||
| 2013-07-19 | Created file gen_group_samplelists that iterates through all genofiles | Zachary Sloan | |
| and builds each groups' samplelist | |||
| 2013-07-18 | Added Amelie's rat data genotypes | Zachary Sloan | |
| Got human mapping mostly working Fixed dataset dropdown menus | |||
| 2013-07-18 | Added to installation notes | Zachary Sloan | |
| Removed webqtlConfigLocal file containing passwords Updated main page dropdown menus (dataset_menu_structure.json) | |||
| 2013-06-13 | Merge /home/sam/gene into flask | Zachary Sloan | |
| Conflicts: wqflask/wqflask/templates/index_page.html Merging the code on Sam's branch onto my own | |||
| 2013-04-17 | Created file with pickled SNPIterator (from input.py) data | Zachary Sloan | |
| for HLC datasets Still need to read in file | |||
| 2013-04-02 | pylmm code is running for human data (plink .bed genotype files) | Zachary Sloan | |
| 2013-02-07 | Added code to marker_regression.py that creates the numpy arrays to | Zachary Sloan | |
| pass to Nick's code and changed the prep_data.py code to operate on a list of phenotype values instead of a textfile with the values delimited | |||
| 2013-01-25 | Fixed a few bugs while trying to get the code running on the new server | Zachary Sloan | |
| 2012-05-24 | Trying to get stuff working under new structure | Sam Ockman | |
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