genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2017-08-29	Mostly changes related to getting gemma working with covariates and BIMBAM fi...	zsloan
2017-05-21	Merge from the diet branch.	Pjotr Prins
2017-04-05	- Temporary traits can be created, viewed, and added to collections	zsloan
2016-10-07	Saner handling of TMPDIR and TEMPDIR	Pjotr Prins
2016-09-25	tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2	Pjotr Prins
2016-09-10	Support for running maintenance scripts so they can pick up all webserver set...	Pjotr Prins
2016-06-17	Removed trailing spaces in .py and .js files	Pjotr Prins
2016-05-31	Allow the json dir to be in the old location.	Pjotr Prins
2016-05-26	Issue with certain samples (like BXD65a, ones were there are multiple for a s...	zsloan
2016-05-23	Reaper mapping results are now correct and account for samples with two names...	zsloan
2016-05-13	Removing ref. to HTMLPATH	Pjotr Prins
2016-05-13	WebqtlConfig.py: Constant handling	Pjotr Prins
2016-05-13	Fix paths for images	Pjotr Prins
2016-04-20	Add file	Pjotr Prins
2016-02-25	fixed untracked files	zsloan
2015-12-14	GN1 mapping full genome figure now correct for pylmm and output to web page	zsloan
2015-12-12	Changed loop drawing qtl curve to fix some issues; still need to make it draw...	zsloan
2015-07-09	Mapping methods now check for existing genotype files.	zsloan
2015-03-27	Changed HTMLPATH in webqtlConfig since I forgot to in the last commit (since ...	zsloan
2015-03-25	Pair scan image now loads properly	zsloan
2015-03-24	Change back port location and home directory location; this should be in exte...	zsloan
2015-03-23	Updates to make GN2 work on my version of penguin (ports, and paths)	DannyArends
2013-08-07	Fixed things with the dataset dropdowns and mRNA datasets	Zachary Sloan
2013-07-19	Created file gen_group_samplelists that iterates through all genofiles	Zachary Sloan
2013-07-18	Added Amelie's rat data genotypes	Zachary Sloan
2013-07-18	Added to installation notes	Zachary Sloan
2013-06-13	Merge /home/sam/gene into flask	Zachary Sloan
2013-04-17	Created file with pickled SNPIterator (from input.py) data	Zachary Sloan
2013-04-02	pylmm code is running for human data (plink .bed genotype files)	Zachary Sloan
2013-02-07	Added code to marker_regression.py that creates the numpy arrays to	Zachary Sloan
2013-01-25	Fixed a few bugs while trying to get the code running on the new server	Zachary Sloan
2012-05-24	Trying to get stuff working under new structure	Sam Ockman