genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2019-02-15	Fixed error caused by change to N values in database (now takes strings ↵	zsloan
	instead of integers) Fixed error that caused N to show up as "null" in the trait sample table instead of "x"
2019-02-12	Added GeneWeaver linkout	zsloan
	Fixed some issues with sorting in various tables Changed header appearance for some pages Fixed bug where basic stats table would sometimes be duplicated or show up with empty fields
2018-10-01	- Can now remove cofactors from correlation scatterplot and select them by ↵	zsloan
	just clicking their row in collection - Cofactor color picker now works in Safari/Macs - Displays N for relevant samples in trait page sample table - Don't show bar chart when N>256 - Mapping loading page contents better centered - Anonymous collections timeout correctly listed as 30 days now - Minor allele frequency can actually be changed for GEMMA now (previously didn't work) - Fixed transcript position marker location for mapping results - Notifies user if their e-mail isn't associated with an account when they attempt to request forgotten password - Users can now map with submitted traits - Histogram width changes depending upon number of bins (need to improve this still) - Improved Q-q plot (previously called "probability plot")
2017-06-12	Fixed issue where 0.0 values would be converted into X's on the trait page	zsloan

2016-12-12	Moved a bunch of functions out of the GeneralTrait class that didn't need to ↵	zsloan
	be there and changed the code that calls them accordingly Improved loadings plot on the correlation matrix page to look like GN1's figure (though it's vector and GN1's was static) Removed some unused code from show_trait.py changed appearance of table headers some, though needs a little more work Updated dataset_menu_structure.json
2016-11-15	Fixed issue where sample values of 0 would sometimes be displayed as 'x', ↵	zsloan
	which would result in wrong correlation results Fixed issue where the mean would sometimes be displayed into of the additive effect
2016-10-03	Debug: sanitize some output	Pjotr Prins

2016-08-05	Fixed issue that caused some interval mapping results to be wrong; the cause ↵	zsloan
	seems to be related to some strains being renamed in the genofiles Added a message to the Add to Collection page warning users that anonymous collections will only be stored for 5 days Updated genofiles
2016-06-18	Logging settings	Pjotr Prins

2016-06-18	Logger	Pjotr Prins

2016-06-18	Changed file permssions to non-executable	Pjotr Prins

2016-06-17	Removed trailing spaces in .py and .js files	Pjotr Prins

2016-05-23	Reaper mapping results are now correct and account for samples with two ↵	zsloan
	names (like BXD65a) R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues.
2015-05-23	new probability plot (using NVD3 library)	Artem Tarasov
	* z scores are computed on the client side (using jStat library) * added Shapiro-Wilk test results
2014-07-21	Fixed issue where sample values were ordered on the trait page	Zachary Sloan

2014-07-18	Added outlier highlighting	Zachary Sloan
	Changed order of tabs in statistics panel on trait page Started working on heatmap
2012-10-23	Finished coffeescript that handles the home page dataset selection dropdowns	Zachary Sloan

2012-09-28	Finished getting extra attributes to display correctly in the trait data table	Zachary Sloan

2012-09-25	Got trait data page running for human dataset, changed list of sample ↵	Zachary Sloan
	objects to a SampleList object
2012-08-29	Fixed so that outliers are now correctly highlighted	Zachary Sloan

2012-08-28	Various changes related to the webqtlCaseData object and the way ↵	Zachary Sloan
	values/variances/num_cases are called in DataEditingPage.py
2012-06-05	Ran reindent.py recursively on wqflask directory	Sam Ockman

2012-05-24	Trying to get stuff working under new structure	Sam Ockman