| Age | Commit message (Expand) | Author |
|---|
| 2016-05-26 | Issue with certain samples (like BXD65a, ones were there are multiple for a s......Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments)
Fixed error when searching genotype data sets
| zsloan |
| 2016-05-23 | Reaper mapping results are now correct and account for samples with two names......R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues.
| zsloan |
| 2016-05-18 | Updated dataset selection dropdown menus and fixed error caused by traits wit... | zsloan |
| 2016-04-19 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development...Conflicts:
wqflask/base/trait.py
| zsloan |
| 2016-04-13 | Moved the code getting the description/location because it was throwing an er... | zsloan |
| 2016-04-13 | Global search should be able to return description and location columns now | zsloan |
| 2016-04-11 | Figured out how to load results into dataTable using AJAX, but still need to ......Added code getting the description, etc to trait.py since it was missed from last commit
| zsloan |
| 2016-04-11 | Changed the way trait data is retrieved for the global search page (it now ge......This change increases the speed by a bit (85 seconds to 66 seconds for example)
Made the column width for location a bit wider for global search page so it doesn't spill onto a second line
| zsloan |
| 2016-03-18 | Replaced header with other information in qtl map...Began adding menu to qtl map
Fixed global search to not retrieve samples (to increase speed)
Got the vector plot working again so it can be displayed alongside the gn1-style plot
Only display the vector plot when doing GEMMA to speed up (this might not be necessary)
| zsloan |
| 2016-03-14 | Changed the way headers look across all pages...Changed the way details are displayed in show trait page
Changed search query so that it orders results by symbol
| zsloan |
| 2016-03-02 | Increased gsearch speed by removing unnecessary query for sample data...Still slower than preferable due to having to query the gn1 database for every trait in the search results
| zsloan |
| 2015-07-09 | Some phenotype searches were throwing an error due to an assert statement in ... | zsloan |
| 2015-06-29 | Merge pull request #72 from lomereiter/issue69...Fixes #69 | zsloan |
| 2015-06-22 | fixed a few potential security issues | Artem Tarasov |
| 2015-06-18 | fix all_samples_ordered...move duplicated code into a method,
handle the case of missing f1/f12 correctly
| Artem Tarasov |
| 2015-05-22 | Fixed issue where correlation didn't work for human traits (and probably some... | zsloan |
| 2015-05-12 | Fix #35...* 'aliases' and 'location' are shown only where relevant
* descriptions for phenotype datasets are provided at the top
| Artem Tarasov |
| 2015-04-10 | Added git large file system (the .gitattributes files) and fixed an issue whe... | zsloan |
| 2014-12-12 | Added a additive effect column to search result and collection tables...Fixed the header so that it looks fine when resizing
| Zachary Sloan |
| 2014-10-02 | Fixed an error when there's no locus for mRNA expression traits | Zachary Sloan |
| 2014-08-21 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master
| Lei Yan |
| 2014-06-25 | Added Karl's correlation matrix code...Improved the "scatterplot matrix" feature on the trait page so that
it matches the chosen trait against every selected trait
| Zachary Sloan |
| 2014-06-06 | Implimented Karl Broman's lodchart code for the interval mapping function....Suggestive/significant bars and additive effect curve added
| Zachary Sloan |
| 2013-11-27 | Clicking a trait in "color by trait" now gets all of its sample values...that will be used to color the bar graph
| Zachary Sloan |
| 2013-11-26 | Made some progress towards getting the traits inside a collection to display ... | Zachary Sloan |
| 2013-11-25 | Got the interval mapping results into a table | Zachary Sloan |
| 2013-11-01 | Merge /home/sam/gene | Zachary Sloan |
| 2013-10-30 | More work on collections | Sam |
| 2013-10-25 | Began working on color coding bar chart by extra attributes | Zachary Sloan |
| 2013-09-13 | Merge https://github.com/zsloan/genenetwork...Resolved conflicts:
wqflask/base/trait.py
wqflask/wqflask/correlation/correlationFunction.py
wqflask/wqflask/correlation/correlation_function.py
wqflask/wqflask/correlation/correlation_functions.py
wqflask/wqflask/correlation/show_corr_results.py
| Lei Yan |
| 2013-08-07 | Fixed things with the dataset dropdowns and mRNA datasets...Improved the templates for a couple pages related to changing user
password, etc
| Zachary Sloan |
| 2013-07-18 | Added Amelie's rat data genotypes...Got human mapping mostly working
Fixed dataset dropdown menus
| Zachary Sloan |
| 2013-07-16 | Wrote code that can get a dataset's type for every single GN...dataset; previously we could not view traits in datasets that
were not in the DBType table in the database
| Zachary Sloan |
| 2013-06-25 | Merge git://github.com/zsloan/genenetwork into flask | Lei Yan |
| 2013-06-20 | Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask...Conflicts:
wqflask/requirements.txt
wqflask/wqflask/correlation/show_corr_results.py
| Zachary Sloan |
| 2013-06-19 | Moved the normalize_values function to separate file corr_result_helpers.py...Added docstring test to normalize_values
Number of overlapping samples column now displays correctly in the
correlation results page
| Lei Yan |
| 2013-06-19 | Fixed issue where the Mean Expr, Max LRS, and Max LRS Location columns...in the correlation page weren't displaying
| Lei Yan |
| 2013-06-19 | Merge branch 'flask' of git://github.com/zsloan/genenetwork into flask...Conflicts:
wqflask/base/data_set.py
| Lei Yan |
| 2013-06-19 | Changed QTL parameter name to "get_qtl_info" on trait.py and...other places it's called, like search_results.py
Added other trait info fields to correlation results page
| Lei Yan |
| 2013-06-19 | Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask...Conflicts:
wqflask/base/data_set.py
wqflask/wqflask/views.py
Fixed a couple conflicts to merge Lei's code related to the correlation page
| Zachary Sloan |
| 2013-06-13 | Fixed issue where too much memory was used as a result of creating a...dataset object for each trait in the correlation results
Added new fields/columns for each trait in the correlation result table
(max LRS, max LRS location, mean expression)
Fixed error if trait doesn't have these fields
| Lei Yan |
| 2013-06-11 | Put trait info for correlation results page into a dictionary instead...of storing list of GeneralTrait objects
Added print statements to track memory usage
| Lei Yan |
| 2013-05-31 | Fixed the location column for the quick search page...Began writing some jquery to automatically open the first tab
within each species tab on the quick search page (not done yet)
| Zachary Sloan |
| 2013-05-30 | Rewrote some code in get_trait_info in dataset.py...Added spearman correlation to show_corr_results and template
| Lei Yan |
| 2013-05-08 | Worked on correlation page...Wrote function in dataset.py that gets all the traits in a dataset
and their sample values
| Lei Yan |
| 2013-01-18 | Renamed CorrelationPage.py to show_corr_results.py...Worked with correlation code; got to the code that
begins to do the actual correlations
Created a function "get_dataset_and_trait" in
the new file "helper_functions.py" because the
code initializing the dataset and trait objects
was repeated in multiple places
| Zachary Sloan |
| 2013-01-03 | Created template for marek regression page and made the compute button direct...to it
added asbolute_import in data_set.py and trait.py
Made several minor changes and deleted commented out code in trait.py
| Zachary Sloan |
| 2012-12-07 | Got basic statistics in show_trait to display the correct number...of samples for each group
Got show_trait page to display for genotype traits
| Zachary Sloan |
| 2012-12-06 | Made many small changes to show_trait/data_set/search_results/trait to...remove use of the formData object and cursor
| Zachary Sloan |
| 2012-12-05 | Renamed webqtlTrait.py to trait.py...Renamed webqtlTrait class to GeneralTrait
Began process of removing fd from show_trait.py
Created DatasetGroup object in data_set.py (this may end up becoming
its own file later if it becomes big enough)
| Zachary Sloan |
