aboutsummaryrefslogtreecommitdiff
path: root/wqflask/base/trait.py
AgeCommit message (Expand)Author
2015-05-22Fixed issue where correlation didn't work for human traits (and probably some...zsloan
2015-05-12Fix #35...* 'aliases' and 'location' are shown only where relevant * descriptions for phenotype datasets are provided at the top Artem Tarasov
2015-04-10Added git large file system (the .gitattributes files) and fixed an issue whe...zsloan
2014-12-12Added a additive effect column to search result and collection tables...Fixed the header so that it looks fine when resizing Zachary Sloan
2014-10-02Fixed an error when there's no locus for mRNA expression traitsZachary Sloan
2014-08-21Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master Lei Yan
2014-06-25Added Karl's correlation matrix code...Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait Zachary Sloan
2014-06-06Implimented Karl Broman's lodchart code for the interval mapping function....Suggestive/significant bars and additive effect curve added Zachary Sloan
2013-11-27Clicking a trait in "color by trait" now gets all of its sample values...that will be used to color the bar graph Zachary Sloan
2013-11-26Made some progress towards getting the traits inside a collection to display ...Zachary Sloan
2013-11-25Got the interval mapping results into a tableZachary Sloan
2013-11-01Merge /home/sam/geneZachary Sloan
2013-10-30More work on collectionsSam
2013-10-25Began working on color coding bar chart by extra attributesZachary Sloan
2013-09-13Merge https://github.com/zsloan/genenetwork...Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py Lei Yan
2013-08-07Fixed things with the dataset dropdowns and mRNA datasets...Improved the templates for a couple pages related to changing user password, etc Zachary Sloan
2013-07-18Added Amelie's rat data genotypes...Got human mapping mostly working Fixed dataset dropdown menus Zachary Sloan
2013-07-16Wrote code that can get a dataset's type for every single GN...dataset; previously we could not view traits in datasets that were not in the DBType table in the database Zachary Sloan
2013-06-25Merge git://github.com/zsloan/genenetwork into flaskLei Yan
2013-06-20Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask...Conflicts: wqflask/requirements.txt wqflask/wqflask/correlation/show_corr_results.py Zachary Sloan
2013-06-19Moved the normalize_values function to separate file corr_result_helpers.py...Added docstring test to normalize_values Number of overlapping samples column now displays correctly in the correlation results page Lei Yan
2013-06-19Fixed issue where the Mean Expr, Max LRS, and Max LRS Location columns...in the correlation page weren't displaying Lei Yan
2013-06-19Merge branch 'flask' of git://github.com/zsloan/genenetwork into flask...Conflicts: wqflask/base/data_set.py Lei Yan
2013-06-19Changed QTL parameter name to "get_qtl_info" on trait.py and...other places it's called, like search_results.py Added other trait info fields to correlation results page Lei Yan
2013-06-19Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask...Conflicts: wqflask/base/data_set.py wqflask/wqflask/views.py Fixed a couple conflicts to merge Lei's code related to the correlation page Zachary Sloan
2013-06-13Fixed issue where too much memory was used as a result of creating a...dataset object for each trait in the correlation results Added new fields/columns for each trait in the correlation result table (max LRS, max LRS location, mean expression) Fixed error if trait doesn't have these fields Lei Yan
2013-06-11Put trait info for correlation results page into a dictionary instead...of storing list of GeneralTrait objects Added print statements to track memory usage Lei Yan
2013-05-31Fixed the location column for the quick search page...Began writing some jquery to automatically open the first tab within each species tab on the quick search page (not done yet) Zachary Sloan
2013-05-30Rewrote some code in get_trait_info in dataset.py...Added spearman correlation to show_corr_results and template Lei Yan
2013-05-08Worked on correlation page...Wrote function in dataset.py that gets all the traits in a dataset and their sample values Lei Yan
2013-01-18Renamed CorrelationPage.py to show_corr_results.py...Worked with correlation code; got to the code that begins to do the actual correlations Created a function "get_dataset_and_trait" in the new file "helper_functions.py" because the code initializing the dataset and trait objects was repeated in multiple places Zachary Sloan
2013-01-03Created template for marek regression page and made the compute button direct...to it added asbolute_import in data_set.py and trait.py Made several minor changes and deleted commented out code in trait.py Zachary Sloan
2012-12-07Got basic statistics in show_trait to display the correct number...of samples for each group Got show_trait page to display for genotype traits Zachary Sloan
2012-12-06Made many small changes to show_trait/data_set/search_results/trait to...remove use of the formData object and cursor Zachary Sloan
2012-12-05Renamed webqtlTrait.py to trait.py...Renamed webqtlTrait class to GeneralTrait Began process of removing fd from show_trait.py Created DatasetGroup object in data_set.py (this may end up becoming its own file later if it becomes big enough) Zachary Sloan