genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2020-08-27	Remove unused imports	BonfaceKilz

2020-08-26	Remove "from __future__ import new_feature" statements	BonfaceKilz
	See: <https://docs.python.org/2/library/2to3.html#2to3fixer-future>
2018-10-11	- Added fix for GEMMA LOCO	zsloan
	- Added all current SNP browser code (not complete yet) - Added change to convert_geno_to_bimbam that makes it ignore .geno files marked as "filler" (so ones where the .geno file is fake and we sometimes directly receive the genotypes as BIMBAM) - Changes TheSpecies object in species.py to accept species name as well as dataset name
2018-04-06	Mapping figure output now gives more accurate information	zsloan
	Committing partway through removing a bunch of unused code/files just in case something necessary gets removed
2016-06-23	Logger: SQL	Pjotr Prins

2016-06-18	Changed file permssions to non-executable	Pjotr Prins

2016-06-17	Removed trailing spaces in .py and .js files	Pjotr Prins

2014-06-25	Added Karl's correlation matrix code	Zachary Sloan
	Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait
2014-05-05	Committing a bunch of changes related to integrating GEMMA and	Zachary Sloan
	adding the correlation matrix page
2013-06-26	Got code that creates DataSets object running	Zachary Sloan
	Fixed one genofile that had extra quotation marks in the comments that caused an error Defaults mb_graph_interval to 1 for species without chromosome lengths in megabases
2013-04-09	Nick's code works fine with human data	Zachary Sloan
	Added option to limit results based on lod score (which also changes the y-axis of the plot)
2013-03-12	Got cashing working with pickle	Zachary Sloan

2013-01-08	Created IndChromosome class in species.py and wrote functions for	Zachary Sloan
	chromosome-related attributes Began to try and pass qtlreaper results as js_data to use when drawing graphs
2013-01-08	Deleted some unnecessary code in marker_regression.py and fixed some bugs	Zachary Sloan
	Added a couple utility functions to the Chromosomes class in species.py
2013-01-03	Began working on marker_regression.py and created Chromosomes class	Zachary Sloan
	in species.py
2012-12-18	Created new file species.py and species class object TheSpecies	Zachary Sloan
	Converted html for the mapping tabs to bootstrap and redid html inside of the Interval Mapping tab Added text input for # of permutation tests and bootstrap tests