genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2023-06-22	Update calls to `database_connection` function	Frederick Muriuki Muriithi
	Pass in the database URI at call time.
2023-05-31	Compute dataset type from name.	Frederick Muriuki Muriithi

2022-09-21	Added Markers/HumanMarkers import to datasetgroup.py and removed it from	zsloan
	__init__.py Previously it threw an error when it tried to use Markers/HumanMarkers in datasetgroup.py; since Markers/HumanMarkers doesn't seem to be used anywhere else, I think it's okay for the import to only be in datasetgroup.py
2022-09-21	Refactor: pass redis and db connections as argument	Frederick Muriuki Muriithi
	Pass the redis and database connection/cursors as arguments to the class methods, and do not retain a copy of the connections/cursors. This allows us to do the connection management in the context managers elsewhere - ideally, at the top-level. For now the context manager is within the `create_dataset` function, but this should be moved out to a higher level once the lower levels are verified to be working as expected.
2022-09-20	Remove global `Dataset_Getter` variable	Frederick Muriuki Muriithi
	Since the `__post_init__` method in the 'DatasetType' class checks whether data is in redis before hitting the database, it does not matter whether there is a global object of the type, as long as we make sure to call the object correctly. This commit makes that happen.
2022-09-20	Decompose file into separate modulesrefactor-data_set_py-20220920	Frederick Muriuki Muriithi
	To ease future refactors on the code, decompose the file into a module with multiple modules that can be refactored semi-independently.