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to it
added asbolute_import in data_set.py and trait.py
Made several minor changes and deleted commented out code in trait.py
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Converted html for the mapping tabs to bootstrap and redid html inside of
the Interval Mapping tab
Added text input for # of permutation tests and bootstrap tests
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Continued bug-shooting related to getting show_trait running
with phenotype traits
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remove use of the formData object and cursor
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Renamed webqtlTrait class to GeneralTrait
Began process of removing fd from show_trait.py
Created DatasetGroup object in data_set.py (this may end up becoming
its own file later if it becomes big enough)
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and using simple sqlalchemy
Got Pheno/MrnaAssay dataset searches working again
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Renamed webqtlTrait to GeneralTrait and began rewriting parts
Changed database code in many places to use simple sqlalchemy
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Wrote function for phenotype author searches
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Began fixing bugs related to this fix, still in progress
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Put most of the code for cisLRS and transLRS searches into the class
CisTransLrsSearch (might change this name to something else later)
Simplified escape code for searches in do_search.py
Got search_results working again after some changes
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for getting trait info that was in search_results.py into its respective class
Renamed webqtlDataset to DataSet/create_dataset in webqtlTrait.py,
webqtlDatabaseFunction.py, and CorrelationPage.py
Got search page running again for mRNA assay data sets with these changes
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Renamed the class webqtlDataset to DataSet
Finished cisLRS and transLRS search types in d_search.py
Fixed parent/f1 issue in show_trait.py
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