genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2013-07-19	Finished integrating code that reads sample list from geno files	Zachary Sloan
2013-07-19	Created file gen_group_samplelists that iterates through all genofiles	Zachary Sloan
2013-07-16	Wrote code that can get a dataset's type for every single GN	Zachary Sloan
2013-06-27	Created a group manager page where user administrators can create	Zachary Sloan
2013-06-26	Moved code creating DataSets object to a function in dataset.py	Zachary Sloan
2013-06-26	Got code that creates DataSets object running	Zachary Sloan
2013-06-25	Added DataSets class to dataset.py that will be used to create list of	Zachary Sloan
2013-06-21	Fixed bug where cursor was still being used in query	Zachary Sloan
2013-06-19	Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask	Zachary Sloan
2013-06-13	Fixed issue where too much memory was used as a result of creating a	Lei Yan
2013-06-12	Fixed a couple issues with the template that caused the	Zachary Sloan
2013-06-11	Put trait info for correlation results page into a dictionary instead	Lei Yan
2013-05-30	Rewrote some code in get_trait_info in dataset.py	Lei Yan
2013-05-28	Have correlation values appearing in a table in the template	Lei Yan
2013-05-23	Worked on rewriting the function in data_set.py that gets the sample	Lei Yan
2013-05-23	Changed the way the query that gets sample ids is generated	Lei Yan
2013-05-23	Now calculates correlation values for traits, but not yet in template	Lei Yan
2013-05-09	Just added some print statements so I can show matrix/vector	Zachary Sloan
2013-05-08	Worked on correlation page	Lei Yan
2013-04-09	Nick's code works fine with human data	Zachary Sloan
2013-04-05	Made changes to get pylmm code working with HMDP datasets	Zachary Sloan
2013-04-02	Committing before splitting code that runs pylmm with plink files	Zachary Sloan
2013-04-02	pylmm code is running for human data (plink .bed genotype files)	Zachary Sloan
2013-03-19	Searches work for the full access human datasets with mRNA assay	Zachary Sloan
2013-03-12	Got cashing working with pickle	Zachary Sloan
2013-03-07	Progress bar is now completely working	Zachary Sloan
2013-03-02	Created generate_probesetfreeze_file to create the	Zachary Sloan
2013-02-14	Have marker regression results displaying as a scatterplot (just the points)	Zachary Sloan
2013-02-13	Fixed some bugs related to getting the marker regression page working	Zachary Sloan
2013-02-12	Edited marker_regression.py and data_set.py to store the p-values	Zachary Sloan
2013-01-31	Changed fd to kw in search_results.py, commented out some lines	Zachary Sloan
2013-01-18	Renamed CorrelationPage.py to show_corr_results.py	Zachary Sloan
2013-01-03	Began working on marker_regression.py and created Chromosomes class	Zachary Sloan
2013-01-03	Created template for marek regression page and made the compute button direct	Zachary Sloan
2012-12-18	Created new file species.py and species class object TheSpecies	Zachary Sloan
2012-12-06	Added minimum/maximum to basic statistics table	Zachary Sloan
2012-12-06	Got show_trait running again for MrnaAssay traits	Zachary Sloan
2012-12-06	Made many small changes to show_trait/data_set/search_results/trait to	Zachary Sloan
2012-12-05	Renamed webqtlTrait.py to trait.py	Zachary Sloan
2012-12-05	Continued to make changes related to getting rid of cursor/db_conn	Zachary Sloan
2012-12-04	Changed parser to allow quotes (i.e. name="rw williams")	Zachary Sloan
2012-12-04	Began changing references to cursor/db_conn to use sqlalchemy	Zachary Sloan
2012-11-30	Added example of escaping strings now that trasitioning to simple SQLAlchemy	Zachary Sloan
2012-11-30	Started switching to using basic sqlalchemy to handle db connection/queries	Zachary Sloan
2012-11-29	Changed a number of variables (riset to group, db to dataset)	Zachary Sloan
2012-11-28	Made some small changes to get code working for genotype searches	Zachary Sloan
2012-11-27	Created subclass for each main data set type and moved the code	Zachary Sloan
2012-11-27	Renamed webqtlDataSet.py to data_set.py	Zachary Sloan