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blatseq_fix
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data_set.py
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Author
2020-08-28
Merge branch 'testing' into build/python3-migration
BonfaceKilz
2020-08-27
Remove redundant methods which are defined elsewhere
BonfaceKilz
2020-08-27
Replace "string.split" & "string.join" with python's inbuilt methods
BonfaceKilz
2020-08-26
Remove "from __future__ import new_feature" statements
BonfaceKilz
2020-08-26
Rename "unicode" to "str"
BonfaceKilz
2020-08-25
Fixed issue in DatasetType that caused an error when trying to load new
zsloan
2020-08-20
Handle module renames in the standard library
BonfaceKilz
2020-08-20
Disable python2 QTLReaper
BonfaceKilz
2020-08-19
Make Python more idiomatic
BonfaceKilz
2020-08-19
Replace `izip` with python's built-in equivalent
BonfaceKilz
2020-07-27
Abstract away redundant code into set_dataset_key method
BonfaceKilz
2020-07-27
Use the correct redis instance inside object
BonfaceKilz
2020-07-24
Merge pull request #409 from BonfaceKilz/Build/add-tests
zsloan
2020-07-24
Fixed queries that were wrongly returning Data IDs as Ns
zsloan
2020-07-24
Inject redis instance into DatasetType class
BonfaceKilz
2020-07-24
Apply autopep-8
BonfaceKilz
2020-07-24
Remove unused import
BonfaceKilz
2020-06-22
Fixed issue with temp traits not working for trait page functions like correl...
zsloan
2020-06-17
Adding all the authentication stuff
zsloan
2020-05-07
Fixed blatseq issue and geno correlation issue
blatseq_fix
zsloan
2020-05-07
Committing current progress on group manager + a minor fix in dataset.py
zsloan
2020-04-27
Added timeout for when/if it does the REST API query, so it doesn't hang inde...
zsloan
2020-04-27
Made change that should allow dataset structure to be loaded from Redis inste...
zsloan
2020-04-26
Removed the code that was still writing the database menu JSON
zsloan
2020-04-24
Replaced hard-coded instances of GN2 urls with ones pulled from settings file
zsloan
2020-04-24
Made a fix that should prevent the issue where new datasets cause an error wh...
zsloan
2020-04-06
Added Mean column for phenotype traits in search and global search result tables
zsloan
2020-03-27
Fixed issue where GEMMA wasn't showing up for certain groups
zsloan
2020-03-27
Added integration for using RData files with R/qtl, plus some other changes t...
zsloan
2020-02-07
Users can now add and do mapping on genotype files that only include a subset...
zsloan
2019-12-04
Added M to the possible non-number 'chromosome' names
zsloan
2019-11-21
Added 3-letter codes to unpublished phenotype traits and fixed issue with ord...
zsloan
2019-11-14
Changed code to rebuild dataset list each time you view the trait page to avo...
zsloan
2019-11-05
Fixed issue with ordering items in correlation dataset select dropdown
zsloan
2019-10-24
Changed logic for generating drop-downs such that it shows the correct Phenot...
zsloan
2019-10-18
Added UniProt link and fixed issue that caused sample lists to not be formed ...
zsloan
2019-07-23
Added change to automatically update datasets list using rest api instead of ...
zsloan
2019-06-24
Got non-LOCO GEMMA mapping working with gemma-wrapper (so caching should work...
zsloan
2019-06-18
Fixed issue with sorting involving 0's on trait page
zsloan
2019-06-05
Fixed issue that caused interval mapping to not work because the python imple...
zsloan
2019-05-24
Replaced qtlreaper Dataset object with python object
zsloan
2019-03-18
- Added PCA traits to correlation matrix. You can't change their names yet or...
zsloan
2019-02-13
Removed pylmm references and related functions
Pjotr Prins
2019-02-05
Fixed issue with getting marker info that affected heatmap and possibly other...
zsloan
2019-01-11
Got InDel working for Variant Browser
zsloan
2018-12-21
Fixed collections so they can be very large (1000+ traits)
zsloan
2018-04-19
Changed width of top bar and a couple other html objects to 100% instead of s...
zsloan
2018-04-06
Mapping figure output now gives more accurate information
zsloan
2017-12-20
Bring in some earlier work - mostly documentation and startup handling
Pjotr Prins
2017-11-06
Replaced Histogram and Bar Chart with Plotly version and added new Box Plot w...
zsloan
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