| Age | Commit message (Expand) | Author |
|---|---|---|
| 2013-01-18 | Renamed CorrelationPage.py to show_corr_results.py...Worked with correlation code; got to the code that begins to do the actual correlations Created a function "get_dataset_and_trait" in the new file "helper_functions.py" because the code initializing the dataset and trait objects was repeated in multiple places | Zachary Sloan |
| 2013-01-03 | Began working on marker_regression.py and created Chromosomes class...in species.py | Zachary Sloan |
| 2013-01-03 | Created template for marek regression page and made the compute button direct...to it added asbolute_import in data_set.py and trait.py Made several minor changes and deleted commented out code in trait.py | Zachary Sloan |
| 2012-12-18 | Created new file species.py and species class object TheSpecies...Converted html for the mapping tabs to bootstrap and redid html inside of the Interval Mapping tab Added text input for # of permutation tests and bootstrap tests | Zachary Sloan |
| 2012-12-06 | Added minimum/maximum to basic statistics table...Continued bug-shooting related to getting show_trait running with phenotype traits | Zachary Sloan |
| 2012-12-06 | Got show_trait running again for MrnaAssay traits | Zachary Sloan |
| 2012-12-06 | Made many small changes to show_trait/data_set/search_results/trait to...remove use of the formData object and cursor | Zachary Sloan |
| 2012-12-05 | Renamed webqtlTrait.py to trait.py...Renamed webqtlTrait class to GeneralTrait Began process of removing fd from show_trait.py Created DatasetGroup object in data_set.py (this may end up becoming its own file later if it becomes big enough) | Zachary Sloan |
| 2012-12-05 | Continued to make changes related to getting rid of cursor/db_conn...and using simple sqlalchemy Got Pheno/MrnaAssay dataset searches working again | Zachary Sloan |
| 2012-12-04 | Changed parser to allow quotes (i.e. name="rw williams")...Renamed webqtlTrait to GeneralTrait and began rewriting parts Changed database code in many places to use simple sqlalchemy | Zachary Sloan |
| 2012-12-04 | Began changing references to cursor/db_conn to use sqlalchemy...Wrote function for phenotype author searches | Zachary Sloan |
| 2012-11-30 | Added example of escaping strings now that trasitioning to simple SQLAlchemy | Zachary Sloan |
| 2012-11-30 | Started switching to using basic sqlalchemy to handle db connection/queries...Began fixing bugs related to this fix, still in progress | Zachary Sloan |
| 2012-11-29 | Changed a number of variables (riset to group, db to dataset)...Put most of the code for cisLRS and transLRS searches into the class CisTransLrsSearch (might change this name to something else later) Simplified escape code for searches in do_search.py Got search_results working again after some changes | Zachary Sloan |
| 2012-11-28 | Made some small changes to get code working for genotype searches | Zachary Sloan |
| 2012-11-27 | Created subclass for each main data set type and moved the code...for getting trait info that was in search_results.py into its respective class Renamed webqtlDataset to DataSet/create_dataset in webqtlTrait.py, webqtlDatabaseFunction.py, and CorrelationPage.py Got search page running again for mRNA assay data sets with these changes | Zachary Sloan |
| 2012-11-27 | Renamed webqtlDataSet.py to data_set.py...Renamed the class webqtlDataset to DataSet Finished cisLRS and transLRS search types in d_search.py Fixed parent/f1 issue in show_trait.py | Zachary Sloan |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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