Age | Commit message (Expand) | Author |
2021-04-30 | autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133 | BonfaceKilz |
2021-04-30 | autopep8: Fix W504 | BonfaceKilz |
2021-04-30 | autopep8: Fix E501 | BonfaceKilz |
2021-04-30 | autopep8: Fix E301,E302,E303,E304,E305,E306 | BonfaceKilz |
2021-04-30 | autopep8: Fix E20-E27...Run:
python -m autopep8 --in-place --recrusive ./ --select\
E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,\
E242,E251,E252,E26,E265,E266,E27 -p 3
| BonfaceKilz |
2021-04-29 | Run `sed -i 's/(object)//g'`...See: https://is.gd/pL7IJF
Ran:
find . \( -type d -name .git -prune \) -o -type f -print0 | xargs -0 sed -i 's/(object)//g'
| BonfaceKilz |
2021-04-29 | base: data_set: Remove unused method...* wqflask/base/data_set.py (Dataset.get_accession_id): Delete it.
| BonfaceKilz |
2021-04-29 | base: data_set: Apply pep-8 | BonfaceKilz |
2021-04-29 | base: data_set: Remove unused method...* wqflask/base/data_set.py (riset): Delete class method.
| BonfaceKilz |
2021-04-29 | base: data_set: Rewrite data_set using @dataclass...@dataclasses should be used to hold only data. Since dataset only
encapsulates data, re-writing it using a dataclass makes it more
readable and easier to follow.
| BonfaceKilz |
2021-04-23 | Remove stale comments | BonfaceKilz |
2021-02-11 | Removed some log statements | zsloan |
2020-10-12 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
2020-10-08 | Fixed remaining issue that applies to all dataset types...* wqflask/base/data_set.py - Fixed issue where there was an error when trying to take the len of the query results when there were no results
| zsloan |
2020-10-08 | Fixed issue where new phenotype groups wouldn't be saved to the self.datasets......* wqflask/base/data_set.py - Set "group_name" as a separate variable from "name" to avoid it being used as the key in self.datasets
| zsloan |
2020-09-30 | Removed unused code from TempDataSet class...* wqflask/base/data_set.py - TempDataSet class contained some code
referring to the SQL DB, but temp traits aren't stored in the SQL DB anymore
| zsloan |
2020-08-28 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
2020-08-27 | Remove redundant methods which are defined elsewhere...* wqflask/base/data_set.py: Delete "create_in_clause", and "mescape" which are
defined in "utility.db_tools"
| BonfaceKilz |
2020-08-27 | Replace "string.split" & "string.join" with python's inbuilt methods | BonfaceKilz |
2020-08-26 | Remove "from __future__ import new_feature" statements...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-future>
| BonfaceKilz |
2020-08-26 | Rename "unicode" to "str"...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-unicode>
| BonfaceKilz |
2020-08-25 | Fixed issue in DatasetType that caused an error when trying to load new...datasets
* wqflask/base/data_set.py - Added fetchone() to g.db.execute() which is
what was causing the error
| zsloan |
2020-08-20 | Handle module renames in the standard library...Run:
```
2to3-3.8 -f imports -w . && \
2to3-3.8 -f imports2 -w .
```
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-imports> and
<https://docs.python.org/2/library/2to3.html#2to3fixer-imports2>
| BonfaceKilz |
2020-08-20 | Disable python2 QTLReaper...* wqflask/base/data_set.py: Remove usage of "reaper" to load datasets
| BonfaceKilz |
2020-08-19 | Make Python more idiomatic...Run `2to3-3.8 -f idioms -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-idioms>
| BonfaceKilz |
2020-08-19 | Replace `izip` with python's built-in equivalent...Run `2to3-3.8 -f itertools -w . && 2to3-3.8 -f itertools_imports -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-itertools_imports>
and <https://docs.python.org/2/library/2to3.html#2to3fixer-itertools>
| BonfaceKilz |
2020-07-27 | Abstract away redundant code into set_dataset_key method...* wqflask/base/data_set.py (Dataset):
- Add set_dataset_key
- Remove __call__ method
| BonfaceKilz |
2020-07-27 | Use the correct redis instance inside object...* wqflask/base/data_set.py (DatasetType): Use object's redis instance
| BonfaceKilz |
2020-07-24 | Merge pull request #409 from BonfaceKilz/Build/add-tests...Build/add tests | zsloan |
2020-07-24 | Fixed queries that were wrongly returning Data IDs as Ns | zsloan |
2020-07-24 | Inject redis instance into DatasetType class...* wqflask/base/data_set.py(DatasetType):
- Rename Redis instance to r to avoid confusion and name collisions
- Inject the redis instance into Dataset_Types class to make it easier to test
- Rename Dataset_Types class to DatasetType class
| BonfaceKilz |
2020-07-24 | Apply autopep-8...* wqflask/base/data_set.py: Apply autopep-8
| BonfaceKilz |
2020-07-24 | Remove unused import | BonfaceKilz |
2020-06-22 | Fixed issue with temp traits not working for trait page functions like correl... | zsloan |
2020-06-17 | Adding all the authentication stuff | zsloan |
2020-05-07 | Fixed blatseq issue and geno correlation issueblatseq_fix | zsloan |
2020-05-07 | Committing current progress on group manager + a minor fix in dataset.py | zsloan |
2020-04-27 | Added timeout for when/if it does the REST API query, so it doesn't hang inde... | zsloan |
2020-04-27 | Made change that should allow dataset structure to be loaded from Redis inste... | zsloan |
2020-04-26 | Removed the code that was still writing the database menu JSON | zsloan |
2020-04-24 | Replaced hard-coded instances of GN2 urls with ones pulled from settings file | zsloan |
2020-04-24 | Made a fix that should prevent the issue where new datasets cause an error wh... | zsloan |
2020-04-06 | Added Mean column for phenotype traits in search and global search result tables | zsloan |
2020-03-27 | Fixed issue where GEMMA wasn't showing up for certain groups | zsloan |
2020-03-27 | Added integration for using RData files with R/qtl, plus some other changes t... | zsloan |
2020-02-07 | Users can now add and do mapping on genotype files that only include a subset......Also filtered the results used by Christian's genome browser, so now it should have an easier time loading when dealing with larger numbers of markers
| zsloan |
2019-12-04 | Added M to the possible non-number 'chromosome' names | zsloan |
2019-11-21 | Added 3-letter codes to unpublished phenotype traits and fixed issue with ord... | zsloan |
2019-11-14 | Changed code to rebuild dataset list each time you view the trait page to avo......Fixed logic for UniProt link to use UniProtId instead of protein ID
| zsloan |
2019-11-05 | Fixed issue with ordering items in correlation dataset select dropdown | zsloan |